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[178151_at] 7TM receptor, srbc family

Description F54B8.9 /REP_DB=WormBase Gene ID /WP=CE16111 /TR=O45565 /GB=CAB07629.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 43      6grp_cgc > 07      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 35.3
(0.1)
A 		63.4
(3)
A 		5.6
(-3)
A 		31.6
(-0.3)
A 		58
B 26.9
(-1.1)
A 		68.4
(3)
A 		17.8
(-2)
A 		8.1
(-3)
A 		60
C 38.7
(1)
A 		51.6
(3)
A 		31.1
(-0.2)
A 		13.2
(-3)
A 		38
avr 33.6
(-0.8) 		61.1
(3) 		18.2
(-2.9) 		17.6
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 62.8
(3)
A 		9.7
(-2.4)
A 		36
(0.3)
A 		4.2
(-3)
A 		23.6
(-1)
A 		16.3
(-1.8)
A 		59
B 18.1
(-1.1)
A 		38.3
(3)
A 		9
(-3)
A 		9.2
(-3)
A 		31.1
(1.5)
A 		18.2
(-1.1)
A 		29
C 43
(3)
A 		9.9
(-2.3)
A 		9.9
(-2.3)
A 		9.4
(-2.4)
A 		5.6
(-3)
A 		39.1
(2.4)
A 		37
avr 41.3
(3) 		19.3
(-0.9) 		18.3
(-1.1) 		7.6
(-3) 		20.1
(-0.8) 		24.5
(0) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.9
(2.6)
A 		13.8
(3)
A 		1.5
(-3)
A 		4.6
(-1.5)
A 		12
B 8.6
(-0.3)
A 		16.9
(3)
A 		4.1
(-2.1)
A 		1.7
(-3)
A 		15
C 12.8
(2)
A 		14.8
(3)
A 		10.8
(1.1)
A 		2.2
(-3)
A 		13
avr 11.4
(1.2) 		15.2
(3) 		5.5
(-1.7) 		2.8
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 11.6
(3)
A 		3.4
(-1.7)
A 		7.9
(0.9)
A 		1.1
(-3)
A 		7.1
(0.4)
A 		4
(-1.3)
A 		11
B 6.3
(-0.7)
A 		12.7
(3)
A 		2.2
(-3)
A 		2.4
(-2.9)
A 		12.6
(2.9)
A 		6.8
(-0.4)
A 		11
C 15.9
(3)
A 		3
(-2.5)
A 		2.5
(-2.7)
A 		1.9
(-3)
A 		1.8
(-3)
A 		13.1
(1.8)
A 		14
avr 11.3
(3) 		6.4
(-0.1) 		4.2
(-1.5) 		1.8
(-3) 		7.2
(0.4) 		8
(0.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178151_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14468
Sequence Type Exemplar sequence
Representative Public ID F54B8.9 NCBI
Target Description F54B8.9 /REP_DB=WormBase Gene ID /WP=CE16111 /TR=O45565 /GB=CAB07629.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074553(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074553 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-51) (srbc-51) mRNA, complete cds. 11/11 None
GENEFINDER00000032680 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15822867:15829931:1 10/11 None
F54B8.9 ENSEMBL cdna:known chromosome:CEL140:V:15828994:15830013:1 gene:F54B8.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15828993-15830013(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-51
Ensembl F54B8.9
Entrez Gene 186206 Entrez gene
SwissProt O45565 EMBL-EBI
WormBase CE16111 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07629 Hypothetical protein F54B8.9 [Caenorhabditis elegans] ref|NP_506954.1| Serpentine Receptor, class BC (class B-like) family member (srbc-51) [Caenorhabditis elegans] 1.0E-161
blast CAB07623 Hypothetical protein F54B8.6 [Caenorhabditis elegans] ref|NP_506951.1| Serpentine Receptor, class BC (class B-like) family member (srbc-48) [Caenorhabditis elegans] 1.0E-130
blast CAB07630 Hypothetical protein F54B8.10 [Caenorhabditis elegans] ref|NP_506955.1| Serpentine Receptor, class BC (class B-like) family member (srbc-52) [Caenorhabditis elegans] 1.0E-114
blast CAB07628 Hypothetical protein F54B8.7a [Caenorhabditis elegans] ref|NP_001023966.1| Serpentine Receptor, class BC (class B-like) family member (srbc-49) [Caenorhabditis elegans] 1.0E-104
blast CAI58636 Hypothetical protein F54B8.7b [Caenorhabditis elegans] ref|NP_001023967.1| Serpentine Receptor, class BC (class B-like) family member (srbc-49) [Caenorhabditis elegans] 2.0E-79
blast NP_740807 Serpentine Receptor, class BC (class B-like) family member (srbc-64) [Caenorhabditis elegans] gb|AAL32239.1| Serpentine receptor, class bc (class b-like) protein 64 [Caenorhabditis elegans] 6.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.2E-122
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 4.1E-97
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 8.2E-5
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.0E-59
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.9E-64
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506954.1 6 5-27,42-61,82-104,124-146,178-200,215-237
F54B8.9 6 5-27,42-61,82-104,124-146,178-200,215-237
GENEFINDER00000032680 12 10-32,45-67,82-104,125-144,178-196,216-238,253-275,310-332,347-369,376-398,418-440,461-483
Sequence
Target Sequence 
>C. ELEGANS:178151_AT
gacacttttcttattgtggccgacgttaatatgtgcaaccatgcgagtcactcttgtatt
cttaatctcattcgaccgactaatggcatcattatttccaatttcatatcataaccatcg
ttacaaaataagcacctaccatattctcctcatcgttttttgtagtgcattttttgatca
gtatatattatttgggtactgcaaaaatgtgattgatgttcctctggagtgtgataattt
tcaatgcagtgttaatcagtgttaccaggattattgggtgaaccatgaacaagttctcta
ctatttaattggttcgtcatctgtgatcttatttttcagactgtttgtctggagttattt
tgccaaaacacagaccagccaactaatttcgagggctactcaaatcgcacttctcgactc
tataataatatttgtattcaatattcttccattgtttgtttatgcaaatttctcctcaat
caacttcaaaacggtcggaccgttgacgacggtgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACTTTTCTTATTGTGGCCGACG 538 365 252 Antisense
ATGTGCAACCATGCGAGTCACTCTT 351 49 282 Antisense
GTATTCTTAATCTCATTCGACCGAC 528 451 307 Antisense
AAATAAGCACCTACCATATTCTCCT 273 117 377 Antisense
TTCTCCTCATCGTTTTTTGTAGTGC 470 691 395 Antisense
ATGTGATTGATGTTCCTCTGGAGTG 567 49 458 Antisense
ATTGGTTCGTCATCTGTGATCTTAT 131 5 559 Antisense
CACAGACCAGCCAACTAATTTCGAG 604 193 620 Antisense
TCAAATCGCACTTCTCGACTCTATA 454 629 651 Antisense
GTTTATGCAAATTTCTCCTCAATCA 611 449 709 Antisense
GGTCGGACCGTTGACGACGGTGTCA 177 485 744 Antisense
Sequence Source Affymetrix Proprietary Database