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[178150_at]

Description F36G9.1 /REP_DB=WormBase Gene ID /WP=CE15980 /TR=O45472 /GB=CAB04333.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 09      6grp_cgc > 42      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 20.7
(-3)
A 		37.5
(-1.7)
A 		41.1
(-1.4)
A 		98.6
(3)
P 		78
B 9.6
(-3)
A 		18
(-1.7)
A 		47.2
(3)
A 		39.8
(1.8)
A 		38
C 28.2
(-1.7)
A 		25.5
(-1.9)
A 		6.3
(-3)
A 		110
(3)
M 		104
avr 19.5
(-3) 		27
(-2.3) 		31.5
(-1.9) 		82.8
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 46
(3)
A 		44.4
(2.8)
P 		32
(0.9)
A 		6.5
(-3)
A 		8
(-2.8)
A 		24.9
(-0.2)
A 		40
B 24.9
(0.4)
A 		36.6
(2.5)
A 		11.5
(-2)
A 		14.7
(-1.4)
A 		39.4
(3)
A 		6
(-3)
A 		33
C 35.7
(1)
A 		33.6
(0.6)
A 		34.9
(0.8)
A 		46.6
(3)
A 		32.3
(0.3)
A 		14.4
(-3)
A 		32
avr 35.5
(2.3) 		38.2
(3) 		26.1
(-0.1) 		22.6
(-1.1) 		26.6
(-0) 		15.1
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 7.5
(-3)
A 		8.1
(-2.5)
A 		10.7
(-0.2)
A 		14.4
(3)
P 		7
B 3.1
(-3)
A 		4.5
(-1.9)
A 		10.9
(3)
A 		8.5
(1.2)
A 		8
C 9.3
(-0.4)
A 		7.3
(-1.1)
A 		2.2
(-3)
A 		18.5
(3)
M 		16
avr 6.6
(-3) 		6.6
(-3) 		7.9
(-1.9) 		13.8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.5
(-0.1)
A 		15.8
(3)
P 		7
(-0.7)
A 		1.6
(-3)
A 		2.4
(-2.7)
A 		6.1
(-1.1)
A 		14
B 8.7
(-0.2)
A 		12.2
(1.3)
A 		2.8
(-2.7)
A 		3.9
(-2.3)
A 		16
(3)
A 		2.2
(-3)
A 		14
C 13.2
(3)
A 		10.2
(0.9)
A 		8.9
(-0.1)
A 		9.4
(0.3)
A 		10.4
(1)
A 		4.8
(-3)
A 		8
avr 10.1
(1.1) 		12.7
(3) 		6.2
(-1.7) 		5
(-2.6) 		9.6
(0.8) 		4.4
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178150_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13256
Sequence Type Exemplar sequence
Representative Public ID F36G9.1 NCBI
Target Description F36G9.1 /REP_DB=WormBase Gene ID /WP=CE15980 /TR=O45472 /GB=CAB04333.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028718(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028718 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-56) (srw-56) mRNA, complete cds. 11/11 None
F36G9.16 ENSEMBL cdna:known chromosome:CEL140:V:15954015:15955445:-1 gene:F36G9.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15954014-15957615(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srw-56
Ensembl F36G9.16
Entrez Gene 3565971 Entrez gene
SwissProt Q7YTM3 EMBL-EBI
WormBase CE34849 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE17829 Hypothetical protein F36G9.16 [Caenorhabditis elegans] ref|NP_001023889.1| Serpentine Receptor, class W family member (srw-56) [Caenorhabditis elegans] 0.0
blast CAB04333 Hypothetical protein F36G9.1 [Caenorhabditis elegans] ref|NP_506997.2| Serpentine Receptor, class W family member (srw-57) [Caenorhabditis elegans] 1.0E-114
blast CAA18357 Hypothetical protein H24D24.1 [Caenorhabditis elegans] ref|NP_506996.1| Serpentine Receptor, class W family member (srw-59) [Caenorhabditis elegans] 3.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 6.1E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023889.1 7 41-58,65-87,128-150,162-184,232-254,274-296,301-335
F36G9.16 7 41-58,65-87,128-150,162-184,232-254,274-296,301-335
Sequence
Target Sequence 
>C. ELEGANS:178150_AT
aaatacccgttgagtcggagagctcaagatctgataatgtcgggctcaggaattcgaatt
attttcatcgtctgcctcccccatttaccattctggttttttgacctacaatggacggaa
attcgagaaaatgggacctggaagcctccttctggttgtaaaaatttcagtgatcatagt
ttacatacaaagtactcgttcgagcatggagaagatataaatgaaactttgcgttttatg
gaagggattttgttcacagtggttccatcaataattcttccaattgccaccggatttctt
atttatgctctgaaaactatgacaagggcagcaacatcctctagaagtaatggttctaca
aaaatggtagtcttaattactgttactttcttgattgctacttttccacttgggatgacc
tatttcgtcaattttttgggccttgatgatatactagcttttttcttatatattattggt
attttttgtgaattcgtgtcaataatcaatggaacattgcattttgtgctatgtgcatgt
gtatcatcactgtatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATACCCGTTGAGTCGGAGAGCTC 546 103 1492 Antisense
CGAATTATTTTCATCGTCTGCCTCC 179 253 1546 Antisense
GAAGCCTCCTTCTGGTTGTAAAAAT 100 339 1632 Antisense
GGATTTTGTTCACAGTGGTTCCATC 213 507 1736 Antisense
AATTCTTCCAATTGCCACCGGATTT 21 177 1764 Antisense
GACAAGGGCAGCAACATCCTCTAGA 288 365 1812 Antisense
GTTACTTTCTTGATTGCTACTTTTC 149 447 1873 Antisense
GCTACTTTTCCACTTGGGATGACCT 497 301 1888 Antisense
TATTTCGTCAATTTTTTGGGCCTTG 486 657 1912 Antisense
GGGCCTTGATGATATACTAGCTTTT 470 491 1929 Antisense
GTGCATGTGTATCATCACTGTATCA 252 481 2024 Antisense
Sequence Source Affymetrix Proprietary Database