[Home] | [Total List]

[178149_s_at]

Description T07C4.4 /REP_DB=WormBase Gene ID /WP=CE00637 /TR=Q22291 /GB=CAA82577.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 25      6grp_total > 52      4grp_total > 60      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5859
1 2 3 4 range
A 5595.4
(2.9)
P 		5546.3
(2.8)
P 		5695.2
(3)
P 		550.1
(-3)
P 		5145
B 6246.2
(3)
P 		5414.8
(2.1)
P 		5516.7
(2.2)
P 		467.6
(-3)
P 		5779
C 5278.5
(2.5)
P 		5711.7
(3)
P 		4815.1
(2)
P 		387
(-3)
P 		5325
avr 5706.7
(3) 		5557.6
(2.8) 		5342.3
(2.6) 		468.2
(-3) 		5239

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4786
1 2 3 4 5 6 range
A 4863.9
(0)
P 		3739.2
(-1.5)
P 		7074.5
(3)
P 		5130.3
(0.4)
P 		3289.5
(-2.1)
P 		2583.7
(-3)
P 		4491
B 4640.5
(-1)
P 		4546.8
(-1.1)
P 		7370
(3)
P 		4609.6
(-1)
P 		3783.6
(-2.2)
P 		3269.8
(-3)
P 		4100
C 3851.4
(-1.4)
P 		4622.2
(0.1)
P 		6071.5
(3)
P 		5383
(1.6)
P 		3053.1
(-3)
P 		3562.9
(-2)
P 		3018
avr 4451.9
(-0.9) 		4302.7
(-1.1) 		6838.7
(3) 		5041
(0.1) 		3375.4
(-2.6) 		3138.8
(-3) 		3700
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1972
1 2 3 4 range
A 2037.3
(3)
P 		1203.9
(0.4)
P 		1488.8
(1.3)
P 		80.5
(-3)
P 		1957
B 1991.9
(3)
P 		1337.3
(0.9)
P 		1278.3
(0.7)
P 		99.6
(-3)
P 		1892
C 1747.3
(3)
P 		1642.1
(2.6)
P 		1678.2
(2.8)
P 		65.3
(-3)
P 		1682
avr 1925.5
(3) 		1394.4
(1.3) 		1481.8
(1.6) 		81.8
(-3) 		1844

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1161
1 2 3 4 5 6 range
A 896.6
(-1.2)
P 		1329.8
(1.6)
P 		1540.7
(3)
P 		1301.2
(1.4)
P 		992.6
(-0.6)
P 		629
(-3)
P 		912
B 1614.7
(1.2)
P 		1513.4
(0.1)
P 		1789.7
(3)
P 		1220.9
(-3)
P 		1537.2
(0.3)
P 		1219.3
(-3)
P 		570
C 1427.5
(1.7)
P 		1410.4
(1.5)
P 		1545.3
(3)
P 		1082.5
(-2)
P 		987.9
(-3)
P 		1192.7
(-0.8)
P 		557
avr 1312.9
(-0.1) 		1417.9
(1) 		1625.2
(3) 		1201.5
(-1.2) 		1172.6
(-1.4) 		1013.7
(-3) 		612
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178149_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6149
Sequence Type Exemplar sequence
Representative Public ID T07C4.4 NCBI
Target Description T07C4.4 /REP_DB=WormBase Gene ID /WP=CE00637 /TR=Q22291 /GB=CAA82577.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066889 NCBI Caenorhabditis elegans SaPosin-like Protein family member (spp-1) (spp-1) mRNA, complete cds. 11/11 A 
SNAP00000030160 ENSEMBL cdna:SNAP chromosome:CEL140:III:10355028:10355555:-1 11/11 None
GENEFINDER00000030163 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10355028:10355403:-1 11/11 None
T07C4.4.2 ENSEMBL cdna:known chromosome:CEL140:III:10355004:10355404:-1 gene:T07C4.4 11/11 None
T07C4.4.1 ENSEMBL cdna:known chromosome:CEL140:III:10355004:10355554:-1 gene:T07C4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10355023-10355551(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol spp-1
Ensembl T07C4.4
Entrez Gene 176452 Entrez gene
SwissProt Q22291 EMBL-EBI
WormBase CE35363 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82577 Hypothetical protein T07C4.4 [Caenorhabditis elegans] ref|NP_499290.2| SaPosin-like Protein family member (spp-1) [Caenorhabditis elegans] 2.0E-28
blast CAA82577 Hypothetical protein T07C4.4 [Caenorhabditis elegans] ref|NP_499290.2| SaPosin-like Protein family member (spp-1) [Caenorhabditis elegans] 3.0E-28
blast CAE56760 Hypothetical protein CBG24563 [Caenorhabditis briggsae] 2.0E-20
Sequence
Target Sequence 
>C. ELEGANS:178149_S_AT
acttctagccaatccagctaacccactcaatctcaagaagcatcacggtgttttctgtga
tgtctgcaaggctctcgtcgagggtggagagaaggttggagatgatgatctcgatgcatg
gcttgatgtgaacatcggaactctttgctggactatgctgttgccgttgcatcacgagtg
tga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCTAGCCAATCCAGCTAACCCA 343 101 168 Antisense
GCTAACCCACTCAATCTCAAGAAGC 245 301 184 Antisense
ATCTCAAGAAGCATCACGGTGTTTT 104 33 197 Antisense
ACGGTGTTTTCTGTGATGTCTGCAA 425 95 212 Antisense
TCTGTGATGTCTGCAAGGCTCTCGT 394 607 221 Antisense
GCAAGGCTCTCGTCGAGGGTGGAGA 421 321 233 Antisense
GATGATGATCTCGATGCATGGCTTG 428 401 268 Antisense
GATCTCGATGCATGGCTTGATGTGA 259 419 274 Antisense
TGTGAACATCGGAACTCTTTGCTGG 381 555 294 Antisense
TTTGCTGGACTATGCTGTTGCCGTT 61 669 311 Antisense
TGTTGCCGTTGCATCACGAGTGTGA 614 561 326 Antisense
Sequence Source Affymetrix Proprietary Database