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[178148_at]

Description F47H4.7 /REP_DB=WormBase Gene ID /WP=CE20824 /TR=Q9XU30 /GB=CAB07206.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 53      6grp_total > 53      4grp_total > 62      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 101.4
(3)
P 		84.7
(0.2)
A 		82.2
(-0.3)
P 		66.2
(-3)
A 		35
B 128.8
(3)
P 		84.1
(-0.6)
A 		82.1
(-0.8)
A 		55.3
(-3)
A 		74
C 112.5
(3)
P 		74.1
(0.6)
A 		85.3
(1.3)
P 		16.9
(-3)
A 		96
avr 114.2
(3) 		81
(0.1) 		83.2
(0.3) 		46.1
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 87.5
(-1.2)
A 		92.9
(-0.9)
P 		159.9
(3)
P 		100.7
(-0.4)
P 		56.9
(-3)
A 		67.4
(-2.4)
A 		103
B 57.2
(-3)
A 		133.8
(0.4)
P 		194.1
(3)
P 		70.3
(-2.4)
P 		76.9
(-2.1)
P 		69.2
(-2.5)
P 		137
C 73.3
(-2.1)
P 		114
(0.3)
P 		160.5
(3)
P 		79.4
(-1.7)
P 		57
(-3)
P 		81.4
(-1.6)
P 		104
avr 72.7
(-2.5) 		113.6
(-0.2) 		171.5
(3) 		83.5
(-1.9) 		63.6
(-3) 		72.7
(-2.5) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 36.9
(3)
P 		18.4
(-1.1)
A 		21.5
(-0.4)
P 		9.7
(-3)
A 		27
B 41.1
(3)
P 		20.8
(-1.2)
A 		19
(-1.5)
A 		11.8
(-3)
A 		29
C 37.2
(3)
P 		21.3
(0.2)
A 		29.7
(1.7)
P 		2.8
(-3)
A 		34
avr 38.4
(3) 		20.2
(-0.6) 		23.4
(0) 		8.1
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 16.1
(-3)
A 		33
(2.4)
P 		34.8
(3)
P 		25.5
(0)
P 		17.2
(-2.6)
A 		16.4
(-2.9)
A 		19
B 19.9
(-2.7)
A 		44.6
(2.5)
P 		47.1
(3)
P 		18.6
(-3)
P 		31.2
(-0.3)
P 		25.8
(-1.5)
P 		29
C 27.2
(-0.3)
P 		34.8
(1.5)
P 		40.9
(3)
P 		16
(-3)
P 		18.4
(-2.4)
P 		27.3
(-0.3)
P 		25
avr 21.1
(-2.7) 		37.5
(2) 		40.9
(3) 		20
(-3) 		22.3
(-2.3) 		23.2
(-2.1) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178148_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14554
Sequence Type Exemplar sequence
Representative Public ID F47H4.7 NCBI
Target Description F47H4.7 /REP_DB=WormBase Gene ID /WP=CE20824 /TR=Q9XU30 /GB=CAB07206.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074989(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074989 NCBI Caenorhabditis elegans F47H4.7 (F47H4.7) mRNA, complete cds. 11/11 None
GENEFINDER00000022044 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17342324:17345357:1 11/11 None
F47H4.7 ENSEMBL cdna:known chromosome:CEL140:V:17341658:17345359:1 gene:F47H4.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022026 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17342323-17345357(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47H4.7
Entrez Gene 185953 Entrez gene
SwissProt Q9XU30 EMBL-EBI
WormBase CE20824 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07206 Hypothetical protein F47H4.7 [Caenorhabditis elegans] ref|NP_507390.1| F47H4.7 [Caenorhabditis elegans] 0.0
blast CAB63437 Hypothetical protein C38D9.6 [Caenorhabditis elegans] ref|NP_507448.1| C38D9.6 [Caenorhabditis elegans] 0.0
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.6E-49
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.7E-8
Sequence
Target Sequence 
>C. ELEGANS:178148_AT
aaaaggaaatttgctcgctggtagagaatatcacacttgaaggattcccattccatgaag
tttgtgaagttctacggaactttaaaccaggagtactttataagattgtgcttaactcgc
caacagacagcgaaggtatagaatcgctaattcatatgaaccaatggaaaacagcccgag
tattcgaaagcagccgaaactgcatacttgccatacctattgagaatttgtttcactttt
cgagttttgacgtttccctgaaatttctttcaaagtcagatgccttgaggatccgagaaa
cactattgcagtccaataattttgaacacggttgcttcagaatgttccagtacgacccaa
ttgagattgtaattgtgtttgaaaaaagttacacaggaggcacgtctggaacaattactt
acaacaatggcgagtcggagttctctattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGGAAATTTGCTCGCTGGTAGA 288 111 1184 Antisense
GAAGGATTCCCATTCCATGAAGTTT 509 333 1222 Antisense
ATTGTGCTTAACTCGCCAACAGACA 536 3 1288 Antisense
GAAAACAGCCCGAGTATTCGAAAGC 241 351 1350 Antisense
ACTGCATACTTGCCATACCTATTGA 403 97 1382 Antisense
AAGTCAGATGCCTTGAGGATCCGAG 624 157 1456 Antisense
GGATCCGAGAAACACTATTGCAGTC 389 513 1472 Antisense
GCTTCAGAATGTTCCAGTACGACCC 248 305 1517 Antisense
GTTCCAGTACGACCCAATTGAGATT 407 441 1527 Antisense
GGAGGCACGTCTGGAACAATTACTT 654 515 1579 Antisense
TGGCGAGTCGGAGTTCTCTATTCAA 365 543 1611 Antisense
Sequence Source Affymetrix Proprietary Database