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[178147_at]

Description F56H6.1 /REP_DB=WormBase Gene ID /WP=CE25910 /TR=O45579 /GB=CAB04490.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 10.7
(-3)
A 		49.8
(1)
A 		17
(-2.4)
A 		69.4
(3)
A 		59
B 45.5
(3)
A 		18.1
(-2)
A 		12.5
(-3)
A 		22.2
(-1.2)
A 		33
C 20.8
(-3)
A 		27.5
(-2.4)
A 		43.9
(-1)
A 		89.9
(3)
A 		69
avr 25.7
(-2.8) 		31.8
(-1.8) 		24.5
(-3) 		60.5
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 10.4
(-3)
A 		31.8
(-1.2)
A 		29.9
(-1.4)
A 		69.3
(1.9)
A 		46.6
(0)
A 		82.3
(3)
A 		72
B 10.5
(-2.9)
A 		27.6
(-1.4)
A 		18.3
(-2.2)
A 		29.3
(-1.3)
A 		79.9
(3)
P 		9.2
(-3)
A 		71
C 25.5
(-1.6)
A 		9.9
(-3)
A 		40.5
(-0.2)
A 		34.2
(-0.8)
A 		76
(3)
A 		28.8
(-1.3)
A 		66
avr 15.5
(-3) 		23.1
(-2.1) 		29.6
(-1.4) 		44.3
(0.3) 		67.5
(3) 		40.1
(-0.2) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.9
(-3)
A 		10.8
(3)
A 		4.4
(-2.6)
A 		10.2
(2.5)
A 		7
B 14.5
(3)
A 		4.5
(-2.2)
A 		2.9
(-3)
A 		4.7
(-2.1)
A 		12
C 6.9
(-3)
A 		7.9
(-2.3)
A 		15.3
(3)
A 		15.2
(2.9)
A 		8
avr 8.4
(-0.8) 		7.7
(-2.5) 		7.5
(-3) 		10
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 1.9
(-3)
A 		11.3
(0.1)
A 		6.5
(-1.5)
A 		17.6
(2.2)
A 		14.1
(1)
A 		20
(3)
A 		18
B 3.7
(-2.9)
A 		9.2
(-1.8)
A 		4.5
(-2.8)
A 		7.8
(-2.1)
A 		32.5
(3)
P 		3.4
(-3)
A 		29
C 9.5
(-1.2)
A 		3
(-3)
A 		10.3
(-1)
A 		6.9
(-1.9)
A 		24.6
(3)
A 		9.7
(-1.1)
A 		22
avr 5
(-3) 		7.8
(-2.1) 		7.1
(-2.3) 		10.8
(-1.1) 		23.7
(3) 		11
(-1.1) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178147_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1151
Sequence Type Exemplar sequence
Representative Public ID F56H6.1 NCBI
Target Description F56H6.1 /REP_DB=WormBase Gene ID /WP=CE25910 /TR=O45579 /GB=CAB04490.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060700(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060700 NCBI Caenorhabditis elegans F56H6.1 (F56H6.1) mRNA, complete cds. 11/11 None
SNAP00000044649 ENSEMBL cdna:SNAP chromosome:CEL140:I:12289343:12290737:1 11/11 None
GENEFINDER00000044671 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12289343:12300334:1 11/11 None
F56H6.1 ENSEMBL cdna:known chromosome:CEL140:I:12289343:12290737:1 gene:F56H6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12289273-12290668(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56H6.1
Entrez Gene 186412 Entrez gene
SwissProt O45579 EMBL-EBI
WormBase CE25910 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04490 Hypothetical protein F56H6.1 [Caenorhabditis elegans] ref|NP_493101.1| F56H6.1 [Caenorhabditis elegans] 0.0
blast CAB04491 Hypothetical protein F56H6.2 [Caenorhabditis elegans] ref|NP_493103.1| F56H6.2 [Caenorhabditis elegans] 0.0
blast CAB04492 Hypothetical protein F56H6.4 [Caenorhabditis elegans] ref|NP_493105.1| F56H6.4 [Caenorhabditis elegans] 1.0E-176
blast CAB04490 Hypothetical protein F56H6.1 [Caenorhabditis elegans] ref|NP_493101.1| F56H6.1 [Caenorhabditis elegans] 1.0E-173
blast CAB03539 Hypothetical protein T09E11.6 [Caenorhabditis elegans] ref|NP_493130.1| T09E11.6 [Caenorhabditis elegans] 1.0E-138
blast CAB03539 Hypothetical protein T09E11.6 [Caenorhabditis elegans] ref|NP_493130.1| T09E11.6 [Caenorhabditis elegans] 1.0E-125
blast CAB04029 Hypothetical protein E03H4.3 [Caenorhabditis elegans] ref|NP_493146.1| E03H4.3 [Caenorhabditis elegans] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 9.0E-124
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493101.1 1 12-29
F56H6.1 1 12-29
SNAP00000044649 1 12-29
GENEFINDER00000044671 1 12-29
Sequence
Target Sequence 
>C. ELEGANS:178147_AT
tgaaggactcctactacgacttgttccgaaaaactacatttggattctattactcttata
tgcacatttcaaaatccttcgattggtacctaaaagctgatgacgatacttatttcgcaa
tggaccatttgaaggagtacctgagcacgctggatcctacaaagccactgtacttaggct
atgttctgaaaccgtattttaaaaatggctacaactccggaggttccggctacatactat
ccaacgctgcagtgaaactattcgtggagaagctgtatcacgacgagtacacatgcccct
acgattgggcagaggatcgtggaatgggcagatgcatggctcgagccgggattttcccga
ctgataccagagatgataaagggctgaatcgattcatgccgttcaagcccagtgagctcg
ccggagttgggcctgaatggcattattatccgatggaggccggtcaatatgcatcacaga
agttcgtttcccttcaccgcctccctcaggacatgatgatctccctcgacgatattctcc
acccaaagctgggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGGACTCCTACTACGACTTGTT 485 575 404 Antisense
CCTGAGCACGCTGGATCCTACAAAG 114 267 543 Antisense
CTACATACTATCCAACGCTGCAGTG 289 227 633 Antisense
ATGGGCAGATGCATGGCTCGAGCCG 121 51 727 Antisense
CTCGAGCCGGGATTTTCCCGACTGA 34 231 743 Antisense
CCCAGTGAGCTCGCCGGAGTTGGGC 414 257 811 Antisense
GGAGGCCGGTCAATATGCATCACAG 212 515 858 Antisense
TCACAGAAGTTCGTTTCCCTTCACC 278 625 877 Antisense
GCCTCCCTCAGGACATGATGATCTC 208 281 902 Antisense
TGATGATCTCCCTCGACGATATTCT 241 567 917 Antisense
GATATTCTCCACCCAAAGCTGGGCA 679 425 934 Antisense
Sequence Source Affymetrix Proprietary Database