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[178146_s_at]

Description Y41E3.6 /REP_DB=WormBase Gene ID /WP=CE18374 /TR=O62434 /GB=CAB09001.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_total > 06      4grp_total > 04      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 206.3
(-2.3)
P 		222.3
(-1.7)
P 		189.6
(-3)
P 		342
(3)
P 		152
B 240.5
(1.7)
P 		178.7
(-1.7)
P 		155.6
(-3)
P 		263.8
(3)
P 		108
C 159.9
(-2)
P 		128.2
(-3)
P 		163.9
(-1.9)
P 		323.7
(3)
P 		196
avr 202.2
(-1.6) 		176.4
(-2.7) 		169.7
(-3) 		309.8
(3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 230.1
(3)
P 		162.2
(0.2)
P 		144
(-0.6)
P 		210.7
(2.2)
P 		157.6
(0)
P 		84.6
(-3)
A 		146
B 208.7
(3)
P 		151
(0.7)
P 		129.9
(-0.1)
A 		102
(-1.2)
A 		156.4
(0.9)
P 		57.3
(-3)
A 		151
C 261.4
(3)
P 		136.2
(-0.7)
P 		114
(-1.4)
A 		59.2
(-3)
A 		114.2
(-1.4)
P 		123.2
(-1.1)
M 		202
avr 233.4
(3) 		149.8
(-0.5) 		129.3
(-1.3) 		124
(-1.5) 		142.7
(-0.8) 		88.4
(-3) 		145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 75.1
(3)
P 		48.3
(-3)
P 		49.6
(-2.7)
P 		50.1
(-2.6)
P 		27
B 76.7
(3)
P 		44.1
(-1.8)
P 		36
(-3)
P 		56.2
(-0)
P 		41
C 52.9
(1.8)
P 		36.8
(-3)
P 		57.1
(3)
P 		54.6
(2.3)
P 		20
avr 68.2
(3) 		43.1
(-3) 		47.6
(-1.9) 		53.6
(-0.5) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 42.4
(0.5)
P 		57.7
(3)
P 		31.4
(-1.3)
P 		53.4
(2.3)
P 		47.5
(1.4)
P 		20.6
(-3)
A 		37
B 72.6
(3)
P 		50.3
(0.4)
P 		31.5
(-1.8)
A 		27
(-2.3)
A 		63.5
(1.9)
P 		21.4
(-3)
A 		51
C 96.9
(3)
P 		41.6
(-0.9)
P 		29
(-1.8)
A 		11.9
(-3)
A 		37
(-1.2)
P 		41.2
(-0.9)
M 		85
avr 70.6
(3) 		49.9
(0.1) 		30.6
(-2.6) 		30.8
(-2.6) 		49.3
(0) 		27.7
(-3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178146_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9243
Sequence Type Exemplar sequence
Representative Public ID Y41E3.6 NCBI
Target Description Y41E3.6 /REP_DB=WormBase Gene ID /WP=CE18374 /TR=O62434 /GB=CAB09001.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070409(11), NM_069573(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070409 NCBI Caenorhabditis elegans Y41E3.6 (Y41E3.6) mRNA, complete cds. 11/11 None
NM_069573 NCBI Caenorhabditis elegans R102.1 (R102.1) mRNA, complete cds. 11/11 None
SNAP00000001438 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15006687:15007097:1 11/11 None
GENEFINDER00000001467 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14989477:15007097:1 11/11 None
SNAP00000034327 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10686676:10687017:1 10/11 None
GENEFINDER00000034350 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10686616:10687017:1 11/11 None
R102.1 ENSEMBL cdna:known chromosome:CEL140:IV:10686616:10687017:1 gene:R102.1 11/11 None
Y41E3.6 ENSEMBL cdna:known chromosome:CEL140:IV:15006687:15007097:1 gene:Y41E3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15006692-15007103(+) 100.0 100.0
chrIV:10686607-10687023(+) 99.51 99.51
Public Domain and Genome References
Gene Title

Ensembl R102.1
Y41E3.6
Entrez Gene 187891 Entrez gene
189831 Entrez gene
SwissProt Q21887 EMBL-EBI
O62434 EMBL-EBI
WormBase CE06329 Wormbase
CE18374 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB09000 Hypothetical protein Y41E3.3 [Caenorhabditis elegans] ref|NP_502809.2| Y41E3.3 [Caenorhabditis elegans] 0.0
blast CAE68134 Hypothetical protein CBG13780 [Caenorhabditis briggsae] 0.0
blast AAU05551 Hypothetical protein Y54G2A.2b [Caenorhabditis elegans] ref|NP_001023493.1| Y54G2A.2b [Caenorhabditis elegans] 5.0E-87
blast CAB09001 Hypothetical protein Y41E3.6 [Caenorhabditis elegans] ref|NP_502810.1| Y41E3.6 [Caenorhabditis elegans] 3.0E-75
blast CAA94355 Hypothetical protein R102.1 [Caenorhabditis elegans] ref|NP_501974.1| R102.1 [Caenorhabditis elegans] 2.0E-72
blast CAA94355 Hypothetical protein R102.1 [Caenorhabditis elegans] ref|NP_501974.1| R102.1 [Caenorhabditis elegans] 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR003191 EMBL-EBI Guanylate-binding protein 4.0E-88
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000001467 2 395-417,422-444
Sequence
Target Sequence 
>C. ELEGANS:178146_S_AT
gatgaaggcattgaaagccgccggaaagcaagacgagtttgctaagaagtttgttaccaa
agatgccatcttcatgggtccactccacgagccagccaatgtgactgaagctgccaagtt
tgcaaaaagcgagatgatggctgccgtctcaaagggagagtttaatatcactattgacga
gatcactccaatcggggacgtcgtcatcgagcgttgcaccatccacgccaaggttgcaag
cggggacaagactggatggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAAGGCATTGAAAGCCGCCGGA 8 411 81 Antisense
AAGCCGCCGGAAAGCAAGACGAGTT 528 149 95 Antisense
GAGTTTGCTAAGAAGTTTGTTACCA 300 399 115 Antisense
AAGATGCCATCTTCATGGGTCCACT 40 155 140 Antisense
AAGCTGCCAAGTTTGCAAAAAGCGA 594 147 188 Antisense
AAGCGAGATGATGGCTGCCGTCTCA 17 151 207 Antisense
GATGGCTGCCGTCTCAAAGGGAGAG 692 405 216 Antisense
GACGAGATCACTCCAATCGGGGACG 131 379 256 Antisense
AATCGGGGACGTCGTCATCGAGCGT 177 167 270 Antisense
ACCATCCACGCCAAGGTTGCAAGCG 325 87 298 Antisense
GCAAGCGGGGACAAGACTGGATGGT 416 319 316 Antisense
Sequence Source Affymetrix Proprietary Database