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[178145_at]

Description F36G9.2 /REP_DB=WormBase Gene ID /WP=CE15981 /TR=O45473 /GB=CAB04334.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 18      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 8.8
(-2.6)
A 		60.5
(2.1)
A 		4.5
(-3)
A 		69.9
(3)
A 		65
B 12.6
(-3)
A 		22.1
(-1.9)
A 		12.8
(-3)
A 		65.9
(3)
A 		53
C 20.5
(-3)
A 		23.3
(-2.5)
A 		26.7
(-1.8)
A 		52.5
(3)
A 		32
avr 14
(-3) 		35.3
(-0.4) 		14.7
(-2.9) 		62.8
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 7.9
(-1.8)
A 		10.1
(-1.2)
A 		25.8
(3)
A 		6.6
(-2.2)
A 		4.6
(-2.7)
A 		3.6
(-3)
A 		22
B 28.4
(-0.3)
A 		25.2
(-0.7)
A 		54.7
(3)
A 		6.5
(-3)
A 		22.3
(-1)
A 		33.6
(0.4)
A 		48
C 2.9
(-3)
A 		40.2
(3)
A 		23.4
(0.3)
A 		11.8
(-1.6)
A 		21.5
(-0)
A 		13
(-1.4)
A 		37
avr 13.1
(-1.9) 		25.2
(0.9) 		34.6
(3) 		8.3
(-3) 		16.1
(-1.2) 		16.7
(-1.1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.2
(-2)
A 		13.1
(3)
A 		1.2
(-3)
A 		10.2
(1.5)
A 		12
B 4
(-2.5)
A 		5.4
(-1.7)
A 		3
(-3)
A 		14
(3)
A 		11
C 6.8
(-2.8)
A 		6.7
(-3)
A 		9.3
(3)
A 		8.9
(2.1)
A 		3
avr 4.7
(-2.8) 		8.4
(0.6) 		4.5
(-3) 		11
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.5
(-2.2)
A 		3.6
(0.4)
A 		5.6
(3)
A 		1.7
(-2)
A 		1.4
(-2.4)
A 		0.9
(-3)
A 		5
B 9.9
(1.2)
A 		8.4
(0.5)
A 		13.3
(3)
A 		1.7
(-3)
A 		9
(0.8)
A 		12.5
(2.6)
A 		12
C 1.1
(-3)
A 		12.3
(3)
A 		6
(-0.4)
A 		2.4
(-2.3)
A 		7
(0.2)
A 		4.4
(-1.2)
A 		11
avr 4.2
(-0.8) 		8.1
(2.8) 		8.3
(3) 		1.9
(-3) 		5.8
(0.7) 		5.9
(0.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178145_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13361
Sequence Type Exemplar sequence
Representative Public ID F36G9.2 NCBI
Target Description F36G9.2 /REP_DB=WormBase Gene ID /WP=CE15981 /TR=O45473 /GB=CAB04334.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074597(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074597 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-186) (srh-186) mRNA, complete cds. 11/11 None
F36G9.2 ENSEMBL cdna:known chromosome:CEL140:V:15958384:15959611:1 gene:F36G9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15958383-15959611(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-186
Ensembl F36G9.2
Entrez Gene 185366 Entrez gene
SwissProt O45473 EMBL-EBI
WormBase CE15981 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04334 Hypothetical protein F36G9.2 [Caenorhabditis elegans] ref|NP_506998.1| Serpentine Receptor, class H family member (srh-186) [Caenorhabditis elegans] 0.0
blast CAE56571 Hypothetical protein CBG24310 [Caenorhabditis briggsae] 1.0E-112
blast AAG24117 Serpentine receptor, class h protein 193 [Caenorhabditis elegans] ref|NP_504183.2| Serpentine Receptor, class H family member (srh-193) [Caenorhabditis elegans] 5.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506998.1 7 15-37,56-78,98-120,140-157,197-219,240-262,277-299
F36G9.2 7 15-37,56-78,98-120,140-157,197-219,240-262,277-299
Sequence
Target Sequence 
>C. ELEGANS:178145_AT
taaaaactggcggcttctggtccacagctcggaaaccctggctagttgtacactactcgg
ctgcaattctctatatggtcccaccgttttgggatcctagtgatcaatctaatatcctca
agaaaaccatgaaacaagttccttgtatccctggttttatcgcagaatacccatacttca
ttctcagcttgaatattatttactgtacaactgtcgtgggattttttgtgtcggatattt
gttttgaaatattatttttcttcttttatatctattggaaaatattgaaacaactgaaag
ctcgttcaatgtcaaaaagaacatttaatcttcaaagagtactgttgatagcgttattca
ttcaagtaatggttcccctaaatctatttatttttccaattgcctatgtgtcatatgcaa
cagtttttgggtattataatcagggattcaataatttggcaattgcaattggctctactc
acggaatatgctcaactgtaactatgatactaatacacagtccttatcgaaacgttttgc
tccgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAAACTGGCGGCTTCTGGTCCAC 69 639 392 Antisense
AGCTCGGAAACCCTGGCTAGTTGTA 77 63 417 Antisense
TAGTTGTACACTACTCGGCTGCAAT 378 653 434 Antisense
CGGCTGCAATTCTCTATATGGTCCC 286 241 449 Antisense
TGGTCCCACCGTTTTGGGATCCTAG 51 551 467 Antisense
TCCTTGTATCCCTGGTTTTATCGCA 502 591 531 Antisense
ACCCATACTTCATTCTCAGCTTGAA 311 91 560 Antisense
TAATGGTTCCCCTAAATCTATTTAT 295 637 758 Antisense
ATTTTTCCAATTGCCTATGTGTCAT 188 15 781 Antisense
TGCAATTGGCTCTACTCACGGAATA 228 577 855 Antisense
CTTATCGAAACGTTTTGCTCCGCAA 58 223 914 Antisense
Sequence Source Affymetrix Proprietary Database