[Home] | [Total List]

[178144_s_at]

Description F56D5.5 /REP_DB=WormBase Gene ID /WP=CE05961 /TR=Q20885 /GB=CAA93504.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 8.5
(-0.9)
A 		0.7
(-3)
A 		2
(-2.6)
A 		22.8
(3)
A 		22
B 13.6
(-0.9)
A 		26.4
(1.3)
P 		1.4
(-3)
A 		36.6
(3)
A 		35
C 5.9
(-2.4)
A 		13
(-1.2)
A 		2.2
(-3)
A 		38.3
(3)
P 		36
avr 9.3
(-1.6) 		13.4
(-0.8) 		1.9
(-3) 		32.6
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 30.5
(-0.1)
A 		1.3
(-3)
A 		4.7
(-2.7)
A 		18.1
(-1.3)
A 		17.8
(-1.4)
A 		61.9
(3)
P 		61
B 0.1
(-3)
A 		14.8
(-0.7)
A 		25
(0.9)
A 		24.2
(0.8)
A 		8.2
(-1.7)
A 		38.6
(3)
P 		39
C 9.2
(-1.9)
A 		1.6
(-3)
A 		10.7
(-1.7)
A 		4.3
(-2.6)
A 		17.7
(-0.7)
A 		42.8
(3)
P 		41
avr 13.3
(-1.9) 		5.9
(-3) 		13.5
(-1.9) 		15.5
(-1.6) 		14.6
(-1.8) 		47.8
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.1
(2.6)
A 		0.2
(-3)
A 		0.5
(-2.4)
A 		3.3
(3)
A 		3
B 4.3
(0.2)
A 		6.5
(2)
P 		0.3
(-3)
A 		7.8
(3)
A 		8
C 2
(-1.7)
A 		3.7
(0.1)
A 		0.8
(-3)
A 		6.5
(3)
P 		6
avr 3.1
(-0.1) 		3.5
(0.3) 		0.5
(-3) 		5.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.6
(-0.9)
A 		0.5
(-3)
A 		1
(-2.8)
A 		4.6
(-1.3)
A 		5.4
(-1)
A 		15.1
(3)
P 		15
B 0
(-3)
A 		4.9
(-1)
A 		6.1
(-0.5)
A 		6.4
(-0.3)
A 		3.3
(-1.6)
A 		14.4
(3)
P 		14
C 3.4
(-1.7)
A 		0.5
(-3)
A 		2.7
(-2)
A 		0.9
(-2.8)
A 		5.7
(-0.7)
A 		14.3
(3)
P 		14
avr 3
(-2.5) 		2
(-3) 		3.3
(-2.4) 		4
(-2) 		4.8
(-1.7) 		14.6
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178144_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8627
Sequence Type Exemplar sequence
Representative Public ID F56D5.5 NCBI
Target Description F56D5.5 /REP_DB=WormBase Gene ID /WP=CE05961 /TR=Q20885 /GB=CAA93504.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069259(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069259 NCBI Caenorhabditis elegans F56D5.5 (F56D5.5) mRNA, complete cds. 11/11 None
SNAP00000006181 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9407347:9408081:-1 11/11 None
GENEFINDER00000006189 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9407347:9408479:-1 11/11 None
F56D5.5 ENSEMBL cdna:known chromosome:CEL140:IV:9407261:9408081:-1 gene:F56D5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9407352-9408087(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56D5.5
Entrez Gene 177772 Entrez gene
SwissProt Q20885 EMBL-EBI
WormBase CE05961 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93504 Hypothetical protein F56D5.5 [Caenorhabditis elegans] ref|NP_501660.1| F56D5.5 [Caenorhabditis elegans] 1.0E-121
blast CAA93504 Hypothetical protein F56D5.5 [Caenorhabditis elegans] ref|NP_501660.1| F56D5.5 [Caenorhabditis elegans] 1.0E-120
blast CAB54394 Hypothetical protein Y38E10A.3 [Caenorhabditis elegans] ref|NP_496686.1| Y38E10A.3 [Caenorhabditis elegans] 3.0E-52
blast CAB54394 Hypothetical protein Y38E10A.3 [Caenorhabditis elegans] ref|NP_496686.1| Y38E10A.3 [Caenorhabditis elegans] 6.0E-52
Sequence
Target Sequence 
>C. ELEGANS:178144_S_AT
gaagcttgaagtcaatgctctgaacaatttaccagttcgacgtaatctttctgttgaaat
ttcaaaccttgaaaccaagaaattgaaaacagaaatcgcatttttaaaagaagaacttgg
acgggagggaaagaaactgacaatcgcaaatacagttcacgagcagttgaaaaaggatct
ggaagcagaaaagagaaattcgatgtttctttcggaattactgacgttctatcaaaatgg
tcaccaaccacaattaccagcagaggatcaatttgtcgattttcttcaaacagagacgag
aagtgtcaaggaagctttaaaagagaaagaagaagaagtgaaaagactattggtggacat
ggaaggaaaaacttttcagaatctaactgaaaaaggccgtatggaagaagaaatgaacga
tgcaaaaagagaagctcagattcttcgcaatgaaatgaaatctcttcagaagaacatgac
tgccaaagaaaatgagttgctcggatatctgagagatgcatcggaaactcatacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTTGAAGTCAATGCTCTGAAC 351 341 126 Antisense
GCTCTGAACAATTTACCAGTTCGAC 658 297 142 Antisense
AGTTCGACGTAATCTTTCTGTTGAA 543 63 159 Antisense
GCAAATACAGTTCACGAGCAGTTGA 510 317 271 Antisense
GATGTTTCTTTCGGAATTACTGACG 322 409 327 Antisense
TCACCAACCACAATTACCAGCAGAG 693 625 366 Antisense
TACCAGCAGAGGATCAATTTGTCGA 480 649 380 Antisense
GTCGATTTTCTTCAAACAGAGACGA 513 471 400 Antisense
GAGAAGCTCAGATTCTTCGCAATGA 307 391 554 Antisense
GAGTTGCTCGGATATCTGAGAGATG 41 399 619 Antisense
GAGATGCATCGGAAACTCATACAGA 24 397 638 Antisense
Sequence Source Affymetrix Proprietary Database