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[178142_at]

Description F58D2.2 /REP_DB=WormBase Gene ID /WP=CE11364 /TR=Q9XVM2 /GB=CAB03147.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 64.7
(0.1)
A 		85.4
(3)
A 		66.7
(0.4)
A 		41.9
(-3)
A 		44
B 81.6
(3)
A 		74.1
(-0.2)
A 		67.5
(-3)
A 		75.6
(0.4)
M 		14
C 29.5
(-3)
A 		107.5
(3)
A 		80.8
(0.9)
A 		86.9
(1.4)
A 		78
avr 58.6
(-3) 		89
(3) 		71.7
(-0.4) 		68.1
(-1.1) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 295
1 2 3 4 5 6 range
A 38.4
(-3)
A 		64.1
(-2.5)
A 		62.2
(-2.5)
A 		92.9
(-1.9)
A 		155.8
(-0.6)
P 		333.5
(3)
P 		295
B 57.9
(-3)
A 		70.7
(-2.6)
A 		87.9
(-2.1)
A 		62.5
(-2.9)
A 		135.3
(-0.7)
P 		259.2
(3)
P 		201
C 66.9
(-2.4)
A 		53.1
(-2.7)
A 		49.1
(-2.8)
A 		43.1
(-3)
A 		161.8
(0.2)
P 		265.2
(3)
P 		222
avr 54.4
(-3) 		62.6
(-2.8) 		66.4
(-2.7) 		66.2
(-2.7) 		151
(-0.5) 		286
(3) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 23.5
(3)
A 		18.5
(1.3)
A 		17.4
(0.9)
A 		6.1
(-3)
A 		17
B 26
(3)
A 		18.3
(-1.4)
A 		15.6
(-3)
A 		16.1
(-2.7)
M 		10
C 9.8
(-3)
A 		30.9
(3)
A 		28.2
(2.2)
A 		14.7
(-1.6)
A 		21
avr 19.8
(1.4) 		22.6
(3) 		20.4
(1.7) 		12.3
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 7.1
(-3)
A 		22.8
(-1.7)
A 		13.5
(-2.5)
A 		23.6
(-1.7)
A 		47
(0.2)
P 		81.2
(3)
P 		74
B 20.2
(-2.7)
A 		23.5
(-2.5)
A 		21.4
(-2.6)
A 		16.6
(-3)
A 		55
(-0.1)
P 		96.7
(3)
P 		80
C 24.8
(-1.8)
A 		16.2
(-2.4)
A 		12.5
(-2.7)
A 		8.7
(-3)
A 		52.4
(0.3)
P 		88.8
(3)
P 		80
avr 17.4
(-2.9) 		20.8
(-2.6) 		15.8
(-3) 		16.3
(-3) 		51.5
(-0.1) 		88.9
(3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178142_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10180
Sequence Type Exemplar sequence
Representative Public ID F58D2.2 NCBI
Target Description F58D2.2 /REP_DB=WormBase Gene ID /WP=CE11364 /TR=Q9XVM2 /GB=CAB03147.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070135(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070135 NCBI Caenorhabditis elegans F58D2.2 (F58D2.2) mRNA, complete cds. 11/11 None
SNAP00000001902 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13189440:13192252:1 11/11 None
GENEFINDER00000001905 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13190135:13192252:1 11/11 None
F58D2.2 ENSEMBL cdna:known chromosome:CEL140:IV:13188901:13192252:1 gene:F58D2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13188906-13192258(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58D2.2
Entrez Gene 178270 Entrez gene
SwissProt Q9XVM2 EMBL-EBI
WormBase CE11364 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03147 Hypothetical protein F58D2.2 [Caenorhabditis elegans] ref|NP_502536.1| F58D2.2 [Caenorhabditis elegans] 0.0
blast CAE69542 Hypothetical protein CBG15751 [Caenorhabditis briggsae] 9.0E-95
blast CAE69542 Hypothetical protein CBG15751 [Caenorhabditis briggsae] 1.0E-94
blast NP_500669 T08B6.4 [Caenorhabditis elegans] gb|AAB94160.2| Hypothetical protein T08B6.4 [Caenorhabditis elegans] 2.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502536.1 3 21-43,510-532,552-574
F58D2.2 3 21-43,510-532,552-574
SNAP00000001902 2 515-537,557-579
GENEFINDER00000001905 2 509-531,551-573
Sequence
Target Sequence 
>C. ELEGANS:178142_AT
gtacaaacaccagaagtcgccacaacaaccactgcacgacccattaagaatattgctgca
acaactaccgtcgcacctctccaattgattgcggatgcttcacttgttgacaatgaccta
caatcgaatcttgaagcaactggagtgtatgtcgatggaaagtggtggtggtgggcaatc
tacctgggatttgtcttgggcactctccttactttggctatcgggggtggaatatgttac
gtgttgcgacgaactgtttatggatattggtaccgcggcatgtacagacgatatggatgt
gatgtctctgcgacaaccgctggtctcactggagttggattcggagcaactacgaccgca
atgcagacgatttctcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACAAACACCAGAAGTCGCCACAA 431 461 1363 Antisense
ACCACTGCACGACCCATTAAGAATA 607 85 1390 Antisense
ATATTGCTGCAACAACTACCGTCGC 301 19 1412 Antisense
ATTGCGGATGCTTCACTTGTTGACA 674 5 1450 Antisense
AGTGGTGGTGGTGGGCAATCTACCT 156 57 1523 Antisense
TCTACCTGGGATTTGTCTTGGGCAC 276 615 1541 Antisense
TCCTTACTTTGGCTATCGGGGGTGG 572 1 1568 Antisense
GATGTGATGTCTCTGCGACAACCGC 415 409 1658 Antisense
CAACCGCTGGTCTCACTGGAGTTGG 242 187 1676 Antisense
GGATTCGGAGCAACTACGACCGCAA 431 509 1699 Antisense
GACCGCAATGCAGACGATTTCTCCT 8 383 1716 Antisense
Sequence Source Affymetrix Proprietary Database