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[178141_s_at]

Description F21H7.2 /REP_DB=WormBase Gene ID /WP=CE15875 /TR=O45345 /GB=CAB07594.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 70.4
(-1.7)
A 		114.9
(3)
A 		58.4
(-3)
A 		78.7
(-0.8)
A 		57
B 72.5
(0.9)
A 		86.2
(2.3)
A 		32.6
(-3)
A 		93.4
(3)
P 		61
C 123.6
(3)
P 		101.5
(0.9)
A 		61.7
(-3)
A 		116.3
(2.3)
P 		62
avr 88.8
(1.5) 		100.9
(3) 		50.9
(-3) 		96.1
(2.4) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 120.2
(-0.5)
A 		142.6
(0.9)
A 		80.5
(-3)
A 		116.4
(-0.7)
P 		168.9
(2.6)
A 		175.2
(3)
M 		95
B 114.1
(-1.7)
P 		124.8
(-1.1)
A 		89.8
(-3)
A 		138
(-0.4)
A 		176.3
(1.7)
M 		200.3
(3)
P 		111
C 116.8
(-2)
A 		107
(-2.4)
A 		110
(-2.2)
A 		162.3
(-0.1)
P 		236.4
(3)
A 		91.6
(-3)
P 		145
avr 117
(-1.6) 		124.8
(-1.1) 		93.4
(-3) 		138.9
(-0.3) 		193.9
(3) 		155.7
(0.7) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 25.6
(3)
A 		24.9
(2.7)
A 		15.3
(-1.4)
A 		11.5
(-3)
A 		14
B 23.1
(3)
A 		21.3
(2.3)
A 		7.6
(-3)
A 		19.9
(1.8)
P 		16
C 40.9
(3)
P 		29.2
(-0.3)
A 		21.5
(-2.5)
A 		19.6
(-3)
P 		21
avr 29.9
(3) 		25.1
(1.1) 		14.8
(-3) 		17
(-2.1) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 22.2
(-2.2)
A 		50.7
(2.9)
A 		17.5
(-3)
A 		29.5
(-0.9)
P 		51
(3)
A 		42.7
(1.5)
M 		34
B 39.7
(-1)
P 		41.5
(-0.8)
A 		21.8
(-3)
A 		36.6
(-1.3)
A 		71.6
(2.6)
M 		74.7
(3)
P 		53
C 43.3
(-1.1)
A 		32.6
(-2.4)
A 		28
(-3)
A 		32.6
(-2.4)
P 		76.5
(3)
A 		30.7
(-2.7)
P 		49
avr 35.1
(-1.3) 		41.6
(-0.4) 		22.4
(-3) 		32.9
(-1.6) 		66.4
(3) 		49.4
(0.7) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178141_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13091
Sequence Type Exemplar sequence
Representative Public ID F21H7.2 NCBI
Target Description F21H7.2 /REP_DB=WormBase Gene ID /WP=CE15875 /TR=O45345 /GB=CAB07594.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074693(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074693 NCBI Caenorhabditis elegans F21H7.2 (F21H7.2) mRNA, complete cds. 11/11 A 
F21H7.2.2 ENSEMBL cdna:known chromosome:CEL140:V:16229737:16232476:-1 gene:F21H7.2 11/11 A 
F21H7.2.1 ENSEMBL cdna:known chromosome:CEL140:V:16229737:16232181:-1 gene:F21H7.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014721 6/11 Cross Hyb Matching Probes None
GENEFINDER00000014736 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16229736-16232152(-) 97.77 100.0
Public Domain and Genome References
Gene Title
Ensembl F21H7.2
Entrez Gene 180087 Entrez gene
SwissProt O45345 EMBL-EBI
WormBase CE15875 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07594 Hypothetical protein F21H7.2 [Caenorhabditis elegans] emb|CAB07364.1| Hypothetical protein F21H7.2 [Caenorhabditis elegans] ref|NP_507094.1| F21H7.2 [Caenorhabditis elegans] 0.0
blast CAE61592 Hypothetical protein CBG05506 [Caenorhabditis briggsae] 1.0E-39
Sequence
Target Sequence 
>C. ELEGANS:178141_S_AT
accggagcaagccaacatcaagcctgaaataacagctgtttacggcctcccatgtgacta
tgcgccaaaaacaatgcccaccaacaaagatgataaaagtcatccggagaaactgtttcc
gggaggccgcccgttttggatgagtaataatggaaagccaccaccggccaaagttatcac
cgtaaaggacgcggttgatctatgtaccagtggaaaacttaagtttttggaaagacagac
tgatgcgccagaagatttgaatccgtattctgaagatttgcaggcaatttgtgccaaaga
taaagagttcttttcggattataaaagaatctggaccaacacgttatacaacttaaaccc
actcccaactgatgctaaggaccgaccagacccgaaatctaccaaacctgtgtctttcaa
gcttccgacaacgactactgtttacaaaaggagagttcaatcagaggctcaaaaagtcac
aactgtgactttccaacccacaccgaaaggtcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGGAGCAAGCCAACATCAAGCCT 283 87 972 Antisense
GAAATAACAGCTGTTTACGGCCTCC 450 357 997 Antisense
TATGCGCCAAAAACAATGCCCACCA 337 657 1030 Antisense
GGCCGCCCGTTTTGGATGAGTAATA 97 541 1096 Antisense
CCACCACCGGCCAAAGTTATCACCG 345 271 1129 Antisense
GGACGCGGTTGATCTATGTACCAGT 42 525 1158 Antisense
CTGATGCTAAGGACCGACCAGACCC 166 239 1340 Antisense
CTACCAAACCTGTGTCTTTCAAGCT 176 5 1370 Antisense
CAAGCTTCCGACAACGACTACTGTT 53 185 1389 Antisense
GTCACAACTGTGACTTTCCAACCCA 347 465 1447 Antisense
TTCCAACCCACACCGAAAGGTCAGA 202 697 1462 Antisense
Sequence Source Affymetrix Proprietary Database