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[178138_at]

Description F38B7.2 /REP_DB=WormBase Gene ID /WP=CE05826 /TR=Q20149 /GB=CAA98470.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 87      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 95      6grp_total > 77      4grp_total > 10      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2249
1 2 3 4 range
A 400.1
(-3)
P 		779.7
(-2)
P 		731.7
(-2.1)
P 		2649.3
(3)
P 		2249
B 638.7
(-2.9)
P 		799.5
(-2.2)
P 		623.8
(-3)
P 		1877.9
(3)
P 		1254
C 575.6
(-3)
P 		797.9
(-2.1)
P 		594
(-2.9)
P 		2126.3
(3)
P 		1551
avr 538.1
(-3) 		792.4
(-2.1) 		649.8
(-2.6) 		2217.8
(3) 		1680

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1252
1 2 3 4 5 6 range
A 372.8
(-3)
P 		384.6
(-2.9)
P 		448.4
(-2.6)
P 		635.5
(-1.6)
P 		799.9
(-0.8)
P 		1538
(3)
P 		1165
B 406
(-2.6)
P 		406.1
(-2.6)
P 		339.8
(-3)
P 		658.2
(-1.3)
P 		677.7
(-1.2)
P 		1441.1
(3)
P 		1101
C 413.6
(-2.3)
P 		286
(-3)
P 		471.6
(-1.9)
P 		778.8
(-0.2)
P 		613.7
(-1.1)
P 		1324.1
(3)
P 		1038
avr 397.5
(-2.8) 		358.9
(-3) 		419.9
(-2.7) 		690.8
(-1.1) 		697.1
(-1.1) 		1434.4
(3) 		1076
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 145.7
(-3)
P 		169.2
(-2.4)
P 		191.3
(-1.9)
P 		387.8
(3)
P 		242
B 203.7
(-1.6)
P 		197.5
(-1.8)
P 		144.5
(-3)
P 		400.2
(3)
P 		256
C 190.5
(-3)
P 		229.4
(-1.6)
P 		207
(-2.4)
P 		358.5
(3)
P 		168
avr 180
(-3) 		198.7
(-2.4) 		180.9
(-3) 		382.2
(3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 469
1 2 3 4 5 6 range
A 68.7
(-3)
P 		136.8
(-1.7)
P 		97.6
(-2.4)
P 		161.2
(-1.2)
P 		241.4
(0.4)
P 		374.5
(3)
P 		306
B 141.3
(-2.2)
P 		135.2
(-2.3)
P 		82.5
(-3)
P 		174.3
(-1.8)
P 		275.4
(-0.5)
P 		537.4
(3)
P 		455
C 153.3
(-1.9)
P 		87.3
(-3)
P 		120
(-2.4)
P 		156.6
(-1.8)
P 		198.6
(-1.1)
P 		443.2
(3)
P 		356
avr 121.1
(-2.6) 		119.8
(-2.7) 		100
(-3) 		164
(-1.9) 		238.5
(-0.6) 		451.7
(3) 		352
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178138_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14551
Sequence Type Exemplar sequence
Representative Public ID F38B7.2 NCBI
Target Description F38B7.2 /REP_DB=WormBase Gene ID /WP=CE05826 /TR=Q20149 /GB=CAA98470.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073527 NCBI Caenorhabditis elegans F38B7.2 (F38B7.2) mRNA, complete cds. 11/11 None
SNAP00000015621 ENSEMBL cdna:SNAP chromosome:CEL140:V:11546607:11547708:1 10/11 None
GENEFINDER00000015627 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11546607:11549563:1 10/11 None
F38B7.2 ENSEMBL cdna:known chromosome:CEL140:V:11546961:11547708:1 gene:F38B7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11546960-11547708(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38B7.2
Entrez Gene 185456 Entrez gene
SwissProt Q20149 EMBL-EBI
WormBase CE05826 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98470 Hypothetical protein F38B7.2 [Caenorhabditis elegans] ref|NP_505928.1| F38B7.2 [Caenorhabditis elegans] 1.0E-107
blast CAA98470 Hypothetical protein F38B7.2 [Caenorhabditis elegans] ref|NP_505928.1| F38B7.2 [Caenorhabditis elegans] 3.0E-95
blast CAA98470 Hypothetical protein F38B7.2 [Caenorhabditis elegans] ref|NP_505928.1| F38B7.2 [Caenorhabditis elegans] 7.0E-95
blast CAE75271 Hypothetical protein CBG23236 [Caenorhabditis briggsae] 4.0E-49
blast CAE75271 Hypothetical protein CBG23236 [Caenorhabditis briggsae] 1.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505928.1 1 133-150
F38B7.2 1 133-150
SNAP00000015621 1 143-160
GENEFINDER00000015627 2 143-160,305-327
Sequence
Target Sequence 
>C. ELEGANS:178138_AT
gagacatctccacaaatttctaccctcgatttgtcaaaaccgtcttcgcagaggaatcac
ataactttgatgtgatagaaaataagactggcaaattttatttcattcatcccgatacgc
caatcgaattcgaaaaatataaatattactggaatgagtcacacgctgatttgaaaggag
tgaaaaatctttgcgaatatcgtataaattggatgattgattcaaaagaaatgtatgaga
cattttcccctgaaaatacacaaatgaaatcattattttatcgttgccattttgcgcaaa
cgtgcatgggattggaatgcaaaattgacagccgactttttgtaccaccaatatttcttc
taattttcatttcaatcttttggtgtttcaagagaatgttacgaagagatatgaaacgtg
ttgagcgtcagacatcattccacataatggacccaacaaatccagcacatcgatctccac
caccaccatacaatgcacaaaactctgctataccgccgccataccataatgctcgacatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACATCTCCACAAATTTCTACCC 378 393 74 Antisense
TTCTACCCTCGATTTGTCAAAACCG 103 689 91 Antisense
AAAACCGTCTTCGCAGAGGAATCAC 296 129 109 Antisense
TCATTCATCCCGATACGCCAATCGA 648 619 176 Antisense
ATGTATGAGACATTTTCCCCTGAAA 687 47 304 Antisense
ATCGTTGCCATTTTGCGCAAACGTG 577 35 353 Antisense
TTGTACCACCAATATTTCTTCTAAT 61 703 413 Antisense
TGAGCGTCAGACATCATTCCACATA 438 569 495 Antisense
CAACAAATCCAGCACATCGATCTCC 568 189 527 Antisense
TGCACAAAACTCTGCTATACCGCCG 398 575 567 Antisense
CCGCCATACCATAATGCTCGACATG 143 263 589 Antisense
Sequence Source Affymetrix Proprietary Database