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[178137_at]

Description C54C6.4 /REP_DB=WormBase Gene ID /WP=CE05495 /TR=Q18818 /GB=CAB00855.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 32      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 2.1
(-3)
A 		7.3
(-2.1)
A 		35.3
(3)
A 		20.7
(0.4)
A 		33
B 3.2
(-2.7)
A 		10.2
(3)
A 		9
(2)
A 		2.8
(-3)
A 		7
C 4.7
(-3)
A 		4.7
(-3)
A 		15.7
(-0.7)
A 		33.3
(3)
A 		29
avr 3.3
(-3) 		7.4
(-1.5) 		20
(3) 		18.9
(2.6) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.4
(0.5)
A 		2.3
(-2.8)
A 		2.4
(-2.7)
A 		2.2
(-3)
A 		5.7
(2.5)
A 		6
(3)
A 		4
B 5.6
(3)
A 		2.7
(-1.8)
A 		4.1
(0.5)
A 		2
(-3)
A 		4.5
(1.2)
A 		3
(-1.3)
A 		4
C 3.3
(1.1)
A 		2.2
(-3)
A 		2.4
(-2.3)
A 		3.8
(3)
A 		2.3
(-2.6)
A 		3.8
(3)
A 		2
avr 4.4
(3) 		2.4
(-3) 		3
(-1.2) 		2.7
(-2.1) 		4.2
(2.4) 		4.3
(2.7) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.8
(-3)
A 		1.6
(-2.4)
A 		9.2
(3)
A 		3
(-1.4)
A 		8
B 1
(-1.7)
A 		2.5
(3)
A 		2.1
(1.7)
A 		0.6
(-3)
A 		2
C 1.5
(-2.7)
A 		1.3
(-3)
A 		5.5
(2.9)
A 		5.6
(3)
A 		4
avr 1.1
(-3) 		1.8
(-2.1) 		5.6
(3) 		3.1
(-0.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.8
(-1.5)
A 		0.8
(-1.5)
A 		0.5
(-3)
A 		0.6
(-2.5)
A 		1.7
(3)
A 		1.5
(2)
A 		1
B 1.9
(3)
A 		0.9
(-1.3)
A 		1
(-0.9)
A 		0.5
(-3)
A 		1.8
(2.6)
A 		1.1
(-0.4)
A 		1
C 1.2
(2.1)
A 		0.7
(-2.1)
A 		0.6
(-3)
A 		0.8
(-1.3)
A 		0.7
(-2.1)
A 		1.3
(3)
A 		1
avr 1.3
(2.3) 		0.8
(-1.5) 		0.7
(-2.3) 		0.6
(-3) 		1.4
(3) 		1.3
(2.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178137_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6262
Sequence Type Exemplar sequence
Representative Public ID C54C6.4 NCBI
Target Description C54C6.4 /REP_DB=WormBase Gene ID /WP=CE05495 /TR=Q18818 /GB=CAB00855.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065329 NCBI Caenorhabditis elegans C54C6.4 (C54C6.4) mRNA, complete cds. 11/11 None
C54C6.4 ENSEMBL cdna:known chromosome:CEL140:III:3555068:3556467:1 gene:C54C6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035318 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3555067-3556467(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54C6.4
Entrez Gene 183766 Entrez gene
SwissProt Q18818 EMBL-EBI
WormBase CE05495 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00855 Hypothetical protein C54C6.4 [Caenorhabditis elegans] ref|NP_497730.1| C54C6.4 [Caenorhabditis elegans] 5.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497730.1 1 122-144
C54C6.4 1 122-144
Sequence
Target Sequence 
>C. ELEGANS:178137_AT
ctcttcttcgtgaaccgatctttagtgaaaaagtcgtctgcttccaagtgcaatttgtca
gagaggtatcaattaacggaaaatatcaaagcattgcgacttctgattgctaaggaccat
tttgggaatatctcaaaaaatatctatatcaaatttgtcactttccagactattcctgcc
gttttctatggcaatatccggaaactctatggttttgtctatgagcatgttattattcca
tatagataccgtattcaactttccaatatgccaaaaagtccccagttatgctccaatctt
tctctgcattatttttgtatgtcaaatatcagaatgacgttctcatttgtctatttctgt
tttttttgtttcagactactacaattatcaacttggctgctcctctctacgtattttatc
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTTCTTCGTGAACCGATCTTTAG 559 229 16 Antisense
AAGTCGTCTGCTTCCAAGTGCAATT 702 155 46 Antisense
GCGACTTCTGATTGCTAAGGACCAT 640 287 111 Antisense
TTGTCACTTTCCAGACTATTCCTGC 641 703 170 Antisense
CTATTCCTGCCGTTTTCTATGGCAA 496 223 185 Antisense
ATGGCAATATCCGGAAACTCTATGG 663 51 203 Antisense
ACCGTATTCAACTTTCCAATATGCC 223 87 263 Antisense
TATGCCAAAAAGTCCCCAGTTATGC 138 657 282 Antisense
CAGTTATGCTCCAATCTTTCTCTGC 411 207 298 Antisense
ACGTTCTCATTTGTCTATTTCTGTT 74 95 352 Antisense
TGCTCCTCTCTACGTATTTTATCAT 652 581 413 Antisense
Sequence Source Affymetrix Proprietary Database