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[178136_at]

Description W03C9.6 /REP_DB=WormBase Gene ID /WP=CE16534 /TR=Q23149 /GB=CAA91359.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 19      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_total > 29      4grp_total > 41      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 253.5
(-3)
P 		307.6
(2.5)
P 		312.2
(3)
P 		262.4
(-2.1)
P 		59
B 227.7
(-3)
P 		373.1
(3)
P 		340.2
(1.6)
P 		290.1
(-0.4)
P 		145
C 257
(-3)
P 		323.4
(3)
P 		317.3
(2.4)
P 		311.7
(1.9)
P 		66
avr 246.1
(-3) 		334.7
(3) 		323.2
(2.2) 		288.1
(-0.2) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 220.2
(1.9)
P 		222.3
(2)
P 		147.3
(-3)
P 		154.4
(-2.5)
P 		205.7
(0.9)
P 		237.2
(3)
P 		90
B 207.5
(0.7)
P 		240.9
(3)
P 		176.7
(-1.5)
P 		204.8
(0.5)
P 		212.1
(1)
P 		155.3
(-3)
P 		86
C 273.3
(3)
P 		239.6
(1.9)
P 		198.9
(0.6)
P 		90.8
(-3)
A 		226.6
(1.5)
P 		187.4
(0.2)
P 		183
avr 233.7
(3) 		234.3
(3) 		174.3
(-1.3) 		150
(-3) 		214.8
(1.6) 		193.3
(0.1) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 92.3
(3)
P 		66.8
(0.2)
P 		81.6
(1.8)
P 		38.4
(-3)
P 		54
B 72.6
(-0.9)
P 		92.1
(3)
P 		78.8
(0.4)
P 		61.8
(-3)
P 		30
C 85.1
(0.4)
P 		93
(1.2)
P 		110.6
(3)
P 		52.6
(-3)
P 		58
avr 83.3
(1.9) 		84
(2) 		90.3
(3) 		50.9
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 40.6
(-1.9)
P 		79.1
(3)
P 		32.1
(-3)
P 		39.1
(-2.1)
P 		62.1
(0.8)
P 		57.8
(0.3)
P 		47
B 72.2
(1.1)
P 		80.2
(2.2)
P 		42.9
(-3)
P 		54.2
(-1.4)
P 		86.2
(3)
P 		57.9
(-0.9)
P 		43
C 101.3
(3)
P 		73.1
(1)
P 		50.6
(-0.7)
P 		18.3
(-3)
A 		73.3
(1)
P 		62.7
(0.2)
P 		83
avr 71.4
(2.1) 		77.5
(3) 		41.9
(-2.3) 		37.2
(-3) 		73.9
(2.5) 		59.5
(0.3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178136_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3526
Sequence Type Exemplar sequence
Representative Public ID W03C9.6 NCBI
Target Description W03C9.6 /REP_DB=WormBase Gene ID /WP=CE16534 /TR=Q23149 /GB=CAA91359.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064145 NCBI Caenorhabditis elegans W03C9.6 (W03C9.6) mRNA, complete cds. 11/11 None
SNAP00000007571 ENSEMBL cdna:SNAP chromosome:CEL140:II:11957449:11960486:1 10/11 None
GENEFINDER00000007579 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11954421:11960486:1 11/11 None
W03C9.6.2 ENSEMBL cdna:known chromosome:CEL140:II:11954412:11960645:1 gene:W03C9.6 11/11 None
W03C9.6.1 ENSEMBL cdna:known chromosome:CEL140:II:11954416:11960645:1 gene:W03C9.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11957770-11960483(+) 96.31 100.0
Public Domain and Genome References
Gene Title
Ensembl W03C9.6
Entrez Gene 189149 Entrez gene
SwissProt Q23149 EMBL-EBI
WormBase CE32948 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6955 immune response inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5164 tumor necrosis factor receptor binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91359 Hypothetical protein W03C9.6 [Caenorhabditis elegans] ref|NP_496546.2| W03C9.6 [Caenorhabditis elegans] 0.0
blast CAE73418 Hypothetical protein CBG20861 [Caenorhabditis briggsae] 0.0
blast CAE73418 Hypothetical protein CBG20861 [Caenorhabditis briggsae] 1.0E-174
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496546.2 12 48-67,82-104,117-139,144-166,179-201,216-237,291-313,323-345,352-374,405-427,448-470,474-496
W03C9.6.2 12 48-67,82-104,117-139,144-166,179-201,216-237,291-313,323-345,352-374,405-427,448-470,474-496
W03C9.6.1 12 48-67,82-104,117-139,144-166,179-201,216-237,291-313,323-345,352-374,405-427,448-470,474-496
SNAP00000007571 11 39-61,68-90,95-117,130-152,167-188,242-264,274-296,303-325,356-378,399-421,425-447
GENEFINDER00000007579 12 47-69,84-106,118-140,145-167,188-210,225-247,301-323,333-355,362-384,415-437,458-480,484-506
Sequence
Target Sequence 
>C. ELEGANS:178136_AT
aaactgtgctcgccatgtcgataacacttggagcagtcggaattctagccgttattgtcg
ccgggctctactttttctgcaatctcggcaatttcctccaacaacgcatcgcgttcctca
taggtttggtaatcttcatgtcaatgtacgtattcacctatccatggacacctgtgagca
atccagttcccccttacaacgccctagccgatgttggctgtaactcgacgacctatagct
ggtgtgacacatcatatgctccggcggctccgcttttgctcattgtgatcgctgttgtca
tgggaattgggatcccgctctcgtcggtggctctcgatgcgatctactcgaaaactctgg
gacctattaatcaggtaagggcttcaaaaatattggaaaaaataaacgaacattattttt
ttaatactttcttttttaaaaccataccttttgtagagcgtaatgcaaggagccatgatc
gtcgcagaggacgttattctcattctgggaccaatttactcgtcacactttggaccatca
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTGTGCTCGCCATGTCGATAAC 624 125 785 Antisense
GAATTCTAGCCGTTATTGTCGCCGG 21 325 824 Antisense
CTCTACTTTTTCTGCAATCTCGGCA 666 229 850 Antisense
ACGTATTCACCTATCCATGGACACC 316 95 932 Antisense
GACACCTGTGAGCAATCCAGTTCCC 190 367 951 Antisense
CAACGCCCTAGCCGATGTTGGCTGT 586 185 981 Antisense
GTTGGCTGTAACTCGACGACCTATA 65 433 997 Antisense
CGCTTTTGCTCATTGTGATCGCTGT 10 255 1055 Antisense
GATCTACTCGAAAACTCTGGGACCT 165 419 1125 Antisense
GCAAGGAGCCATGATCGTCGCAGAG 198 321 1249 Antisense
TACTCGTCACACTTTGGACCATCAA 693 645 1301 Antisense
Sequence Source Affymetrix Proprietary Database