[Home] | [Total List]

[178132_at]

Description C43D7.8 /REP_DB=WormBase Gene ID /WP=CE18552 /TR=Q9XVB6 /GB=CAB03965.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 4.9
(-0.9)
A 		6.2
(0)
A 		2.1
(-3)
A 		10.2
(3)
A 		8
B 5.1
(-2.9)
A 		26.7
(3)
A 		4.7
(-3)
A 		14.7
(-0.3)
A 		22
C 5.8
(-3)
A 		6
(-2.9)
A 		20.5
(0.9)
A 		28.7
(3)
A 		23
avr 5.3
(-3) 		13
(0.7) 		9.1
(-1.2) 		17.9
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 33.6
(3)
A 		3.8
(-2.8)
A 		2.9
(-3)
A 		7.7
(-2.1)
A 		3.1
(-3)
A 		3.6
(-2.9)
A 		31
B 12.5
(-1.7)
A 		22.1
(-0.6)
A 		3
(-2.8)
A 		3.9
(-2.7)
A 		1.6
(-3)
A 		52.3
(3)
A 		51
C 3.1
(-3)
A 		6.8
(-2.4)
A 		3.1
(-3)
A 		3.4
(-2.9)
A 		4.9
(-2.7)
A 		37.3
(3)
A 		34
avr 16.4
(-0.1) 		10.9
(-1.3) 		3
(-3) 		5
(-2.6) 		3.2
(-3) 		31.1
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.8
(3)
A 		1.3
(0.7)
A 		0.5
(-3)
A 		1.5
(1.6)
A 		1
B 1.6
(-2.5)
A 		6.6
(3)
A 		1.1
(-3)
A 		3.1
(-0.8)
A 		6
C 1.9
(-2.8)
A 		1.7
(-3)
A 		7.1
(3)
A 		4.8
(0.4)
A 		5
avr 1.8
(-3) 		3.2
(3) 		2.9
(1.7) 		3.1
(2.6) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.2
(3)
A 		1.3
(-2.3)
A 		0.6
(-3)
A 		2
(-1.5)
A 		1
(-2.6)
A 		0.9
(-2.7)
A 		6
B 4.4
(-1.8)
A 		7.3
(-0.9)
A 		0.7
(-3)
A 		1
(-2.9)
A 		0.6
(-3)
A 		19.5
(3)
A 		19
C 1.1
(-2.8)
A 		2.1
(-2.3)
A 		0.8
(-2.9)
A 		0.7
(-3)
A 		1.6
(-2.5)
A 		12.5
(3)
A 		12
avr 3.9
(-1.1) 		3.6
(-1.3) 		0.7
(-3) 		1.2
(-2.7) 		1.1
(-2.8) 		11
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178132_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13780
Sequence Type Exemplar sequence
Representative Public ID C43D7.8 NCBI
Target Description C43D7.8 /REP_DB=WormBase Gene ID /WP=CE18552 /TR=Q9XVB6 /GB=CAB03965.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075360(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075360 NCBI Caenorhabditis elegans C43D7.8 (C43D7.8) mRNA, complete cds. 11/11 None
C43D7.8 ENSEMBL cdna:known chromosome:CEL140:V:19313156:19313631:-1 gene:C43D7.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010479 8/11 Cross Hyb Matching Probes None
GENEFINDER00000010487 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19313226-19313631(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43D7.8
Entrez Gene 180267 Entrez gene
SwissProt Q9XVB6 EMBL-EBI
WormBase CE18552 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03965 Hypothetical protein C43D7.8 [Caenorhabditis elegans] ref|NP_507761.1| C43D7.8 [Caenorhabditis elegans] 4.0E-55
blast CAB04469 Hypothetical protein F55C9.10 [Caenorhabditis elegans] ref|NP_507759.1| F55C9.10 [Caenorhabditis elegans] 2.0E-33
blast CAB03963 Hypothetical protein C43D7.2 [Caenorhabditis elegans] ref|NP_507766.1| C43D7.2 [Caenorhabditis elegans] 6.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0011
Sequence
Target Sequence 
>C. ELEGANS:178132_AT
tgacgacttttccaattctcaggctgcctgaaaagtctctcaagattgcgattcgctgtc
tgactatggaacaaataatcaagttttctctgatctccgaatctacaaaaaggacagcag
aatcgttgaatcttcaggctgacccgttttggatttgctttggtgaatcggttcatatat
cggttcatgccaattttgtagaaaattatcaacaggatattccttggaaccccgtggaag
ttgatctgagaacattgctagatcatttccagagtgttctccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGACTTTTCCAATTCTCAGGCT 233 571 14 Antisense
TCAGGCTGCCTGAAAAGTCTCTCAA 195 623 32 Antisense
AGTCTCTCAAGATTGCGATTCGCTG 521 61 47 Antisense
GCGATTCGCTGTCTGACTATGGAAC 707 289 61 Antisense
CAAGTTTTCTCTGATCTCCGAATCT 436 183 93 Antisense
TCTTCAGGCTGACCCGTTTTGGATT 51 615 144 Antisense
GACCCGTTTTGGATTTGCTTTGGTG 244 375 154 Antisense
TCGGTTCATATATCGGTTCATGCCA 111 607 181 Antisense
ACAGGATATTCCTTGGAACCCCGTG 200 95 225 Antisense
TGGAACCCCGTGGAAGTTGATCTGA 106 547 238 Antisense
AGATCATTTCCAGAGTGTTCTCCAT 141 67 273 Antisense
Sequence Source Affymetrix Proprietary Database