[Home] | [Total List]

[178131_at]

Description T16G1.2 /REP_DB=WormBase Gene ID /WP=CE20072 /TR=Q9XUP9 /GB=CAB04726.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      6grp_highest_nonorm > 71      6grp_total > 71      4grp_total > 56      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 787
1 2 3 4 range
A 111.3
(-2.8)
A 		620.9
(1.2)
P 		856.1
(3)
P 		79
(-3)
A 		777
B 86.5
(-2.9)
A 		658.8
(1.8)
P 		810.4
(3)
P 		69.1
(-3)
A 		741
C 121.1
(-3)
P 		686.7
(2.3)
P 		764.8
(3)
P 		119.2
(-3)
A 		646
avr 106.3
(-2.9) 		655.5
(1.7) 		810.4
(3) 		89.1
(-3) 		721

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 307.2
(0)
P 		370.7
(2.5)
P 		302.3
(-0.2)
P 		382.2
(3)
P 		333.5
(1.1)
P 		231.2
(-3)
P 		151
B 244.3
(-2)
P 		251.8
(-1.9)
P 		349.4
(0.2)
P 		486.5
(3)
P 		312.4
(-0.6)
P 		197.3
(-3)
P 		289
C 245.3
(-0.7)
P 		355
(1.9)
P 		400
(3)
P 		351.1
(1.8)
P 		356
(1.9)
P 		151
(-3)
P 		249
avr 265.6
(-1) 		325.8
(0.7) 		350.6
(1.4) 		406.6
(3) 		334
(1) 		193.2
(-3) 		213
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 40.5
(-2.2)
A 		134.8
(0.5)
P 		223.8
(3)
P 		11.6
(-3)
A 		212
B 27.6
(-2.6)
A 		162.7
(2.1)
P 		187.8
(3)
P 		14.7
(-3)
A 		173
C 40.1
(-2.5)
P 		197.4
(1.3)
P 		266.5
(3)
P 		20.1
(-3)
A 		246
avr 36.1
(-2.4) 		165
(1.3) 		226
(3) 		15.5
(-3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 56.6
(-3)
P 		131.8
(3)
P 		65.8
(-2.2)
P 		96.9
(0.2)
P 		100.6
(0.5)
P 		56.3
(-3)
P 		76
B 85
(-1.8)
P 		83.8
(-1.9)
P 		84.8
(-1.8)
P 		128.9
(3)
P 		126.9
(2.8)
P 		73.6
(-3)
P 		55
C 90.9
(0.7)
P 		108.3
(2.4)
P 		101.8
(1.8)
P 		70.6
(-1.1)
P 		115.2
(3)
P 		50.5
(-3)
P 		65
avr 77.5
(-1.1) 		108
(2.3) 		84.1
(-0.3) 		98.8
(1.3) 		114.2
(3) 		60.1
(-3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178131_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14478
Sequence Type Exemplar sequence
Representative Public ID T16G1.2 NCBI
Target Description T16G1.2 /REP_DB=WormBase Gene ID /WP=CE20072 /TR=Q9XUP9 /GB=CAB04726.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073831(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073831 NCBI Caenorhabditis elegans T16G1.2 (T16G1.2) mRNA, complete cds. 11/11 None
SNAP00000020365 ENSEMBL cdna:SNAP chromosome:CEL140:V:12933156:12935420:1 11/11 None
GENEFINDER00000020377 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12932077:12935420:1 11/11 None
T16G1.2 ENSEMBL cdna:known chromosome:CEL140:V:12932077:12935420:1 gene:T16G1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12932076-12935420(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16G1.2
Entrez Gene 188552 Entrez gene
SwissProt Q9XUP9 EMBL-EBI
WormBase CE20072 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04726 Hypothetical protein T16G1.2 [Caenorhabditis elegans] ref|NP_506232.1| T16G1.2 [Caenorhabditis elegans] 1.0E-170
blast CAE64715 Hypothetical protein CBG09501 [Caenorhabditis briggsae] 1.0E-148
blast CAB04726 Hypothetical protein T16G1.2 [Caenorhabditis elegans] ref|NP_506232.1| T16G1.2 [Caenorhabditis elegans] 1.0E-119
blast CAE64715 Hypothetical protein CBG09501 [Caenorhabditis briggsae] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:178131_AT
tcaacctccattggtattcactccacaaccaccaattgctcctccaacatttacaatgcc
atcattagttccacagactattcaacagcttccatcatcacttcctcaacaaggtattac
aagacaacagccaccgccagcatttccacaggcttctcaaatgggcttgaaccccgttgg
aatgccccatcaaccatcgaatccacttgttgcttcgaacttcaaccaaccacagcaacc
agtaacactcacacctctgggaactaacccaacgccaactattggagggctccagcaacc
aaattccttaaattccggcggtttacctcaacagcagcaatcagctctttcacctaacca
taatgaagagaaacatgacactcctgagcaacttggatgtggctgggattggcttacaaa
ttcttgtaaagatgtattcgctcttaactggtgtggaaaatgtcatgatttcggaaatat
tttccttcatgactgtaagtgtattgctccattaattccacttccaacaactgttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACCTCCATTGGTATTCACTCCA 370 631 633 Antisense
TTGCTCCTCCAACATTTACAATGCC 381 703 668 Antisense
CAATGCCATCATTAGTTCCACAGAC 188 183 686 Antisense
CTATTCAACAGCTTCCATCATCACT 121 225 710 Antisense
TGGGCTTGAACCCCGTTGGAATGCC 387 551 794 Antisense
GAATCCACTTGTTGCTTCGAACTTC 180 329 831 Antisense
TAACACTCACACCTCTGGGAACTAA 6 639 875 Antisense
TGGAGGGCTCCAGCAACCAAATTCC 7 547 915 Antisense
AACAGCAGCAATCAGCTCTTTCACC 656 133 962 Antisense
GATGTATTCGCTCTTAACTGGTGTG 645 407 1063 Antisense
TAATTCCACTTCCAACAACTGTTCG 43 635 1145 Antisense
Sequence Source Affymetrix Proprietary Database