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[178130_at] 7TM chemoreceptor, sri family

Description F36G9.9 /REP_DB=WormBase Gene ID /WP=CE15986 /TR=O45478 /GB=CAB04339.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 21      6grp_cgc > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 66
(2.3)
A 		12.4
(-2.2)
A 		2.3
(-3)
A 		75
(3)
M 		73
B 46.6
(3)
P 		28.2
(0.6)
A 		1.5
(-3)
A 		41.1
(2.3)
P 		45
C 53.8
(0.3)
P 		13.6
(-2.6)
A 		8
(-3)
A 		91.8
(3)
P 		84
avr 55.5
(1.7) 		18.1
(-1.7) 		3.9
(-3) 		69.3
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 74.2
(3)
P 		2.5
(-2.9)
A 		24.9
(-1.1)
A 		30.3
(-0.6)
A 		13.7
(-2)
A 		1.7
(-3)
A 		73
B 44.8
(3)
A 		2.8
(-2.9)
A 		18.5
(-0.7)
A 		25
(0.2)
A 		1.8
(-3)
A 		20.6
(-0.4)
A 		43
C 38.3
(1.6)
A 		47
(3)
P 		16.5
(-1.8)
A 		8.9
(-3)
A 		9
(-3)
A 		13.2
(-2.3)
A 		38
avr 52.4
(3) 		17.4
(-1.8) 		20
(-1.4) 		21.4
(-1.2) 		8.2
(-3) 		11.8
(-2.5) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 24
(3)
A 		2.7
(-2.5)
A 		0.6
(-3)
A 		11
(-0.3)
M 		23
B 14.9
(3)
P 		7
(-0.2)
A 		0.3
(-3)
A 		8.8
(0.5)
P 		15
C 17.8
(3)
P 		3.9
(-2.6)
A 		2.8
(-3)
A 		15.5
(2.1)
P 		15
avr 18.9
(3) 		4.5
(-1.9) 		1.2
(-3) 		11.8
(0.6) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 13.7
(3)
P 		0.9
(-2.8)
A 		5.4
(-0.7)
A 		7.7
(0.3)
A 		4.1
(-1.3)
A 		0.4
(-3)
A 		13
B 15.6
(3)
A 		0.9
(-2.9)
A 		4.5
(-1.5)
A 		6.6
(-0.6)
A 		0.7
(-3)
A 		7.7
(-0.2)
A 		15
C 14.2
(2.9)
A 		14.4
(3)
P 		4.2
(-1.9)
A 		1.8
(-3)
A 		2.9
(-2.5)
A 		4.4
(-1.8)
A 		13
avr 14.5
(3) 		5.4
(-1.6) 		4.7
(-1.9) 		5.4
(-1.6) 		2.6
(-3) 		4.2
(-2.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178130_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13682
Sequence Type Exemplar sequence
Representative Public ID F36G9.9 NCBI
Target Description F36G9.9 /REP_DB=WormBase Gene ID /WP=CE15986 /TR=O45478 /GB=CAB04339.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074600 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-2) (sri-2) mRNA, complete cds. 11/11 None
SNAP00000043424 ENSEMBL cdna:SNAP chromosome:CEL140:V:15966432:15967795:-1 11/11 None
GENEFINDER00000043440 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15964913:15967795:-1 11/11 None
F36G9.9 ENSEMBL cdna:known chromosome:CEL140:V:15966432:15967795:-1 gene:F36G9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15966431-15967795(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-2
Ensembl F36G9.9
Entrez Gene 185372 Entrez gene
SwissProt O45478 EMBL-EBI
WormBase CE15986 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04339 Hypothetical protein F36G9.9 [Caenorhabditis elegans] ref|NP_507001.1| Serpentine Receptor, class I family member (sri-2) [Caenorhabditis elegans] 0.0
blast CAB04339 Hypothetical protein F36G9.9 [Caenorhabditis elegans] ref|NP_507001.1| Serpentine Receptor, class I family member (sri-2) [Caenorhabditis elegans] 1.0E-153
blast CAB04337 Hypothetical protein F36G9.8 [Caenorhabditis elegans] ref|NP_507002.1| Serpentine Receptor, class I family member (sri-1) [Caenorhabditis elegans] 1.0E-127
blast CAB04337 Hypothetical protein F36G9.8 [Caenorhabditis elegans] ref|NP_507002.1| Serpentine Receptor, class I family member (sri-1) [Caenorhabditis elegans] 1.0E-126
blast CAE61117 Hypothetical protein CBG04874 [Caenorhabditis briggsae] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.2E-88
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.8E-20
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.0E-51
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.1E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507001.1 7 13-35,47-69,99-121,133-155,199-221,251-273,278-300
F36G9.9 7 13-35,47-69,99-121,133-155,199-221,251-273,278-300
SNAP00000043424 6 12-34,49-71,91-113,151-173,203-225,230-252
GENEFINDER00000043440 9 13-35,47-69,99-121,133-155,199-221,251-273,278-300,429-451,471-493
Sequence
Target Sequence 
>C. ELEGANS:178130_AT
gttctattactctccatatggcaagtattcctgatcacaatgatgttaataagcttcaaa
cttgccgtacccgaccaacaagttgctcgagctctttttgcacaattacacccggaactt
cagtacctaatgaccgatgagcacgtgttcattgtgtgcgttgttgttgagctgattcac
gtcatatttttattctcgtgcttcttccggctaggaattggaatggttactgtaatagtg
ctgatttggatgtcgagtagatcattgaaatctatacaaatttcacttacaacaaaaaga
atgcatctacagctgatcaaaagtttgtgccagcagataatagttccaattttggcattc
tacattcccataatagtagtggttgttccactgatgttgagtataccaaatagtcaattg
tcattcttcatttcgctcatctgcttatcatatcacacattttttggaacgttgagcatg
ctttacttcaaccctcattatcgtcaatgggtgatttcagctgtgagaaatcggccaatg
aacacgtctacggcgctcacttcaaagtttgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTATTACTCTCCATATGGCAAG 468 443 427 Antisense
GACCAACAAGTTGCTCGAGCTCTTT 272 383 499 Antisense
GAGCTCTTTTTGCACAATTACACCC 587 387 515 Antisense
TACACCCGGAACTTCAGTACCTAAT 491 639 533 Antisense
CATATTTTTATTCTCGTGCTTCTTC 23 215 609 Antisense
TTTGGCATTCTACATTCCCATAATA 449 665 777 Antisense
GTCAATTGTCATTCTTCATTTCGCT 526 463 839 Antisense
TTCGCTCATCTGCTTATCATATCAC 691 695 858 Antisense
TGAGCATGCTTTACTTCAACCCTCA 293 569 899 Antisense
GCCAATGAACACGTCTACGGCGCTC 15 273 960 Antisense
TACGGCGCTCACTTCAAAGTTTGTA 13 649 975 Antisense
Sequence Source Affymetrix Proprietary Database