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[178127_s_at]

Description F36D3.4 /REP_DB=WormBase Gene ID /WP=CE15968 /TR=O45462 /GB=CAB04318.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 06      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 16
(-1.8)
A 		6.8
(-3)
A 		35.9
(0.8)
A 		52.8
(3)
A 		46
B 55.9
(3)
A 		7.9
(-3)
A 		12.3
(-2.5)
A 		8.5
(-2.9)
A 		48
C 9.2
(-3)
A 		37.5
(3)
A 		16.3
(-1.5)
A 		35.5
(2.6)
A 		28
avr 27
(0.9) 		17.4
(-3) 		21.5
(-1.3) 		32.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 62.1
(2.5)
A 		25
(-1)
A 		3.2
(-3)
A 		10.7
(-2.3)
A 		67.5
(3)
A 		45.1
(0.9)
A 		64
B 51.9
(3)
A 		35.9
(0.1)
A 		19.3
(-3)
A 		22.4
(-2.4)
A 		32
(-0.7)
A 		30.4
(-1)
P 		33
C 28.5
(1.1)
A 		4.6
(-3)
A 		7.1
(-2.6)
A 		39.8
(3)
A 		37.2
(2.6)
M 		30.6
(1.4)
P 		35
avr 47.5
(3) 		21.8
(-1.1) 		9.9
(-3) 		24.3
(-0.7) 		45.6
(2.7) 		35.4
(1.1) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.8
(0.3)
A 		1.5
(-3)
A 		9.4
(3)
A 		7.7
(1.7)
A 		8
B 17.8
(3)
A 		1.9
(-3)
A 		2.9
(-2.6)
A 		1.8
(-3)
A 		16
C 3
(-3)
A 		10.8
(3)
A 		5.7
(-0.9)
A 		6
(-0.7)
A 		8
avr 8.9
(3) 		4.7
(-3) 		6
(-1.1) 		5.2
(-2.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 11.4
(0.3)
A 		8.9
(-0.5)
A 		0.7
(-3)
A 		2.7
(-2.4)
A 		20.4
(3)
A 		11
(0.1)
A 		20
B 18
(3)
A 		11.9
(0.2)
A 		4.7
(-3)
A 		5.9
(-2.5)
A 		13
(0.7)
A 		11.3
(-0)
P 		13
C 10.6
(2.2)
A 		1.4
(-3)
A 		1.8
(-2.8)
A 		8
(0.7)
A 		12
(3)
M 		10.3
(2)
P 		11
avr 13.3
(2.1) 		7.4
(-0.6) 		2.4
(-3) 		5.5
(-1.5) 		15.1
(3) 		10.9
(1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178127_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13643
Sequence Type Exemplar sequence
Representative Public ID F36D3.4 NCBI
Target Description F36D3.4 /REP_DB=WormBase Gene ID /WP=CE15968 /TR=O45462 /GB=CAB04318.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074781(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074781 NCBI Caenorhabditis elegans F36D3.4 (F36D3.4) mRNA, complete cds. 11/11 None
SNAP00000025148 ENSEMBL cdna:SNAP chromosome:CEL140:V:16519175:16520212:-1 11/11 None
GENEFINDER00000025156 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16519175:16520212:-1 11/11 None
F36D3.4 ENSEMBL cdna:known chromosome:CEL140:V:16519083:16520271:-1 gene:F36D3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16519174-16520212(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36D3.4
Entrez Gene 180107 Entrez gene
SwissProt O45462 EMBL-EBI
WormBase CE15968 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04318 Hypothetical protein F36D3.4 [Caenorhabditis elegans] ref|NP_507182.1| F36D3.4 [Caenorhabditis elegans] 2.0E-85
blast CAB07588 Hypothetical protein F21H7.5 [Caenorhabditis elegans] ref|NP_507098.1| F21H7.5 [Caenorhabditis elegans] 4.0E-76
blast CAB02773 Hypothetical protein C25D7.2 [Caenorhabditis elegans] ref|NP_506702.1| C25D7.2 [Caenorhabditis elegans] 1.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.4E-30
Sequence
Target Sequence 
>C. ELEGANS:178127_S_AT
acgtgagagcaaggacaagtcgtcaaaatcgaagagatccaagagatcctcaaaatctaa
aaagtgtgacaagtcctccaagaagtgcgatttgaacaaggctaagaacctctgcccacc
gatcaactcgacagatgtttccgacgtgtccatcaaatcgaattccggtgagaaatccga
gaagtcgaaagctctgaagttggttcccaatcagccaaagtacacattcccggaaggaca
gggtgctgcttcagtgaagtcgtcgactcttcgagcttcgcccaacaagcttccattcgc
agcgacgggaggtgttcagacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTGAGAGCAAGGACAAGTCGTCA 593 93 282 Antisense
TAAAAAGTGTGACAAGTCCTCCAAG 496 639 339 Antisense
CCCACCGATCAACTCGACAGATGTT 332 259 396 Antisense
ATCAACTCGACAGATGTTTCCGACG 171 27 403 Antisense
CCATCAAATCGAATTCCGGTGAGAA 578 269 431 Antisense
GTTCCCAATCAGCCAAAGTACACAT 315 441 484 Antisense
ATTCCCGGAAGGACAGGGTGCTGCT 559 7 507 Antisense
GGGTGCTGCTTCAGTGAAGTCGTCG 112 497 522 Antisense
TGAAGTCGTCGACTCTTCGAGCTTC 418 575 536 Antisense
GCTTCCATTCGCAGCGACGGGAGGT 364 305 570 Antisense
GCAGCGACGGGAGGTGTTCAGACAG 55 315 580 Antisense
Sequence Source Affymetrix Proprietary Database