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[178126_s_at]

Description ZK938.2 /REP_DB=WormBase Gene ID /WP=CE02397 /TR=Q23672 /GB=CAA90142.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 17      4grp_high_8_8 > 25      6grp_highest_nonorm > 80      6grp_total > 17      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 426.9
(3)
P 		125.3
(-2.4)
P 		122.5
(-2.4)
M 		91.1
(-3)
A 		336
B 456.7
(3)
P 		219.3
(-1.3)
P 		123.9
(-3)
M 		188.4
(-1.8)
P 		333
C 393.6
(3)
P 		177.7
(-1.7)
A 		118.5
(-3)
P 		197.8
(-1.3)
A 		275
avr 425.7
(3) 		174.1
(-2) 		121.6
(-3) 		159.1
(-2.3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 430.2
(3)
P 		234.1
(-0.8)
P 		125.2
(-2.9)
P 		124.1
(-3)
P 		122
(-3)
P 		158.2
(-2.3)
P 		308
B 372.4
(3)
P 		226.5
(-0.8)
P 		143.3
(-2.9)
P 		142.4
(-2.9)
P 		160.6
(-2.4)
P 		139.1
(-3)
P 		233
C 329.2
(3)
P 		239.8
(0.1)
P 		145.2
(-3)
P 		167.2
(-2.3)
P 		159.6
(-2.5)
P 		152.6
(-2.8)
P 		184
avr 377.3
(3) 		233.5
(-0.6) 		137.9
(-3) 		144.6
(-2.8) 		147.4
(-2.8) 		150
(-2.7) 		239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 155.4
(3)
P 		27.2
(-2.4)
P 		32
(-2.2)
M 		13.3
(-3)
A 		142
B 145.6
(3)
P 		54.2
(-1.7)
P 		28.7
(-3)
M 		40.1
(-2.4)
P 		117
C 130.3
(3)
P 		51.1
(-1.9)
A 		41.3
(-2.5)
P 		33.4
(-3)
A 		97
avr 143.8
(3) 		44.2
(-2.2) 		34
(-2.7) 		28.9
(-3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 79.3
(2.6)
P 		83.3
(3)
P 		27.3
(-3)
P 		31.5
(-2.6)
P 		36.8
(-2)
P 		38.5
(-1.8)
P 		56
B 129.6
(3)
P 		75.4
(-0.4)
P 		34.8
(-3)
P 		37.7
(-2.8)
P 		65.3
(-1.1)
P 		51.9
(-1.9)
P 		95
C 122
(3)
P 		73.2
(-0.3)
P 		37
(-2.8)
P 		33.6
(-3)
P 		51.6
(-1.8)
P 		51.1
(-1.8)
P 		88
avr 110.3
(3) 		77.3
(0.4) 		33
(-3) 		34.3
(-2.9) 		51.2
(-1.6) 		47.2
(-1.9) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178126_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2631
Sequence Type Exemplar sequence
Representative Public ID ZK938.2 NCBI
Target Description ZK938.2 /REP_DB=WormBase Gene ID /WP=CE02397 /TR=Q23672 /GB=CAA90142.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063719(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063719 NCBI Caenorhabditis elegans ZK938.2 (ZK938.2) mRNA, complete cds. 11/11 None
SNAP00000044676 ENSEMBL cdna:SNAP chromosome:CEL140:II:9837103:9838213:-1 11/11 None
GENEFINDER00000044687 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9837103:9838213:-1 11/11 None
ZK938.2 ENSEMBL cdna:known chromosome:CEL140:II:9837000:9838213:-1 gene:ZK938.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9837099-9838210(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK938.2
Entrez Gene 174540 Entrez gene
SwissProt Q23672 EMBL-EBI
WormBase CE02397 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90142 Hypothetical protein ZK938.2 [Caenorhabditis elegans] ref|NP_496120.1| ZK938.2 [Caenorhabditis elegans] 0.0
blast CAE57959 Hypothetical protein CBG01020 [Caenorhabditis briggsae] 6.0E-78
blast CAE57961 Hypothetical protein CBG01022 [Caenorhabditis briggsae] 3.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 4.7E-8
Pfam IPR000698 EMBL-EBI Arrestin 6.7E-41
Sequence
Target Sequence 
>C. ELEGANS:178126_S_AT
gatggatacacctttaccagcaatctaagatccggaatattttcatccaatgggccgatt
tcgttgaaggtttctgttccaactcttgtttttcgtcaaggacaaactgctgaattccat
tttgaagtgaagaatcacagctcctcaacaatcaacgaaatcttcatcaagttcggaaaa
caagttcattatcattctcgtaaccagctgactccctgtcgcaagtttgactcgcattcg
tgtccactcagtgtataccatcaaaccaactcaagcaactgcattggagaagctactgct
ttgaaggtcaacgttgcaccatactccaccaaatctatcatactgcctttcacaatcccc
gaggaagccaaaactccgagcttctctaccggacttgtaaatttcggctatttcatggag
tttggaattgtgaccaagctgattgtgcaaccaagaatgagggcgacaatttacgtggga
gaaatgccagtcgacaacgtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGATACACCTTTACCAGCAATC 610 407 454 Antisense
TTCATCCAATGGGCCGATTTCGTTG 674 685 495 Antisense
TGAAGGTTTCTGTTCCAACTCTTGT 486 575 518 Antisense
GTGAAGAATCACAGCTCCTCAACAA 709 481 580 Antisense
TATCATTCTCGTAACCAGCTGACTC 618 659 643 Antisense
AAGTTTGACTCGCATTCGTGTCCAC 446 155 676 Antisense
GTCCACTCAGTGTATACCATCAAAC 455 477 695 Antisense
GAAGGTCAACGTTGCACCATACTCC 696 333 756 Antisense
ACCATACTCCACCAAATCTATCATA 64 87 771 Antisense
ATCTATCATACTGCCTTTCACAATC 659 31 786 Antisense
GAGAAATGCCAGTCGACAACGTCAC 700 391 932 Antisense
Sequence Source Affymetrix Proprietary Database