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[178123_at] G-protein coupled receptor, srh family

Description R08H2.6 /REP_DB=WormBase Gene ID /WP=CE12604 /TR=O17989 /GB=CAB04632.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 28      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 49
(0.4)
A 		40.7
(-0.3)
A 		7.4
(-3)
A 		80.4
(3)
P 		73
B 29.6
(0.5)
A 		45.7
(3)
M 		7.8
(-3)
A 		34.8
(1.3)
P 		38
C 34.4
(-1.5)
A 		59.3
(3)
A 		26
(-3)
A 		55.1
(2.2)
M 		33
avr 37.7
(0.3) 		48.6
(1.9) 		13.7
(-3) 		56.8
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 20.3
(-1)
A 		14.9
(-1.6)
A 		42.8
(1.4)
A 		58.6
(3)
A 		48.8
(2)
A 		1.1
(-3)
A 		58
B 15.5
(-2.6)
A 		27.1
(-0.6)
A 		48.5
(3)
A 		39.5
(1.5)
A 		20.9
(-1.7)
A 		12.9
(-3)
A 		36
C 13.5
(-3)
A 		52.5
(3)
P 		49.4
(2.5)
A 		38.7
(0.9)
A 		41.7
(1.3)
A 		26.9
(-0.9)
A 		39
avr 16.4
(-2.5) 		31.5
(0.2) 		46.9
(3) 		45.6
(2.8) 		37.1
(1.2) 		13.6
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.9
(3)
A 		8.8
(-0.4)
A 		1.9
(-3)
A 		11.8
(0.7)
P 		16
B 9.4
(1.8)
A 		11.3
(3)
M 		1.8
(-3)
A 		7.4
(0.5)
P 		10
C 11.4
(-1.3)
A 		17.1
(3)
A 		9.1
(-3)
A 		9.3
(-2.9)
M 		8
avr 12.9
(3) 		12.4
(2.7) 		4.3
(-3) 		9.5
(0.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.7
(-1.6)
A 		5.3
(-0.9)
A 		9.3
(0.7)
A 		14.9
(3)
A 		14.7
(2.9)
A 		0.3
(-3)
A 		15
B 5.4
(-2.5)
A 		9
(0.6)
A 		11.8
(3)
A 		10.5
(1.9)
A 		8.5
(0.2)
A 		4.8
(-3)
A 		7
C 5
(-3)
A 		16
(3)
P 		12.6
(1.1)
A 		7.8
(-1.5)
A 		13.5
(1.6)
A 		9
(-0.8)
A 		11
avr 4.7
(-3) 		10.1
(1.3) 		11.2
(2.2) 		11.1
(2.1) 		12.2
(3) 		4.7
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178123_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13397
Sequence Type Exemplar sequence
Representative Public ID R08H2.6 NCBI
Target Description R08H2.6 /REP_DB=WormBase Gene ID /WP=CE12604 /TR=O17989 /GB=CAB04632.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074417 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-122) (srh-122) mRNA, complete cds. 11/11 A 
R08H2.5 ENSEMBL cdna:known chromosome:CEL140:V:15379087:15380589:-1 gene:R08H2.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012532 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15379189-15379867(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-122
Ensembl R08H2.5
Entrez Gene 187712 Entrez gene
SwissProt O17988 EMBL-EBI
WormBase CE33157 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04631 Hypothetical protein R08H2.5 [Caenorhabditis elegans] ref|NP_506818.2| Serpentine Receptor, class H family member (srh-122) [Caenorhabditis elegans] 0.0
blast CAA16499 Hypothetical protein F08E10.3 [Caenorhabditis elegans] ref|NP_507424.1| Serpentine Receptor, class H family member (srh-123) [Caenorhabditis elegans] 1.0E-125
blast T24052 hypothetical protein R08H2.6 - Caenorhabditis elegans 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506818.2 7 29-51,71-93,108-130,151-168,217-239,259-281,291-313
R08H2.5 7 29-51,71-93,108-130,151-168,217-239,259-281,291-313
Sequence
Target Sequence 
>C. ELEGANS:178123_AT
tcgagagccgtgccagctcattacacaccaaccggtttagaataacaagtactaaatata
gaataatttattattgcatagtactgttcccagctctgtttctggctccgttgctcaagt
ttttccctgaagatcaaagtattgcaaagttagatgcattgagaagttatccatgtccag
ctcaagagttttttacaacgtcggtacttgtggttctcattgatcacgatatgagaaaat
atgctattttaccatcagcaattacagtactaagcgtaattggtcatttcctatttcaca
tggtttgcctagtgtattgtatttaccttttcccctctaaagtcgtttccaaggaaacac
aggagaaacagaaaacgtttctggtcagtgttttatttcaaacatcaattccttttatcg
ttgggattattccacttggagttgttttcgcactcaattcagttggctattattctcaaa
aagtcatgaacttgacattttgttgtgtgatacttcatggcctattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAGAGCCGTGCCAGCTCATTACA 320 603 71 Antisense
GCTCATTACACACCAACCGGTTTAG 64 287 86 Antisense
ATTGCATAGTACTGTTCCCAGCTCT 425 5 143 Antisense
AGTTATCCATGTCCAGCTCAAGAGT 500 63 235 Antisense
AACGTCGGTACTTGTGGTTCTCATT 331 143 267 Antisense
AAGCGTAATTGGTCATTTCCTATTT 4 147 342 Antisense
TTTCCTATTTCACATGGTTTGCCTA 32 671 357 Antisense
AACATCAATTCCTTTTATCGTTGGG 307 137 471 Antisense
ATCGTTGGGATTATTCCACTTGGAG 15 37 487 Antisense
GTTTTCGCACTCAATTCAGTTGGCT 122 447 514 Antisense
TGTGTGATACTTCATGGCCTATTCG 452 555 574 Antisense
Sequence Source Affymetrix Proprietary Database