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[178122_at]

Description F14H3.5 /REP_DB=WormBase Gene ID /WP=CE15830 /TR=O45361 /GB=CAB05481.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 13      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 4.3
(-3)
A 		5.5
(-0.7)
A 		7.4
(3)
A 		5
(-1.6)
A 		3
B 15.8
(3)
A 		2.5
(-2.7)
A 		1.7
(-3)
A 		6.5
(-1)
A 		14
C 27.1
(-1)
A 		4.7
(-2.9)
A 		4
(-3)
A 		74.7
(3)
A 		71
avr 15.7
(-0.2) 		4.2
(-3) 		4.4
(-3) 		28.7
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 39.6
(-0.4)
A 		1.2
(-3)
A 		1.2
(-3)
A 		3.5
(-2.8)
A 		45.7
(-0)
A 		91.4
(3)
P 		90
B 4.6
(-2.9)
A 		3.5
(-3)
A 		5.6
(-2.8)
A 		11.4
(-2.4)
A 		27.8
(-1.2)
A 		84.5
(3)
P 		81
C 10
(-2.7)
A 		30.7
(-1.7)
A 		4.7
(-3)
A 		65.6
(0)
A 		26.8
(-1.9)
A 		124.9
(3)
P 		120
avr 18.1
(-2.1) 		11.8
(-2.5) 		3.8
(-3) 		26.8
(-1.6) 		33.4
(-1.2) 		100.3
(3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.6
(1.5)
A 		1.2
(-0.5)
A 		1.9
(3)
A 		0.7
(-3)
A 		1
B 5
(3)
A 		0.6
(-2.7)
A 		0.4
(-3)
A 		1.4
(-1.7)
A 		5
C 9
(1.1)
A 		1.4
(-3)
A 		1.4
(-3)
A 		12.6
(3)
A 		11
avr 5.2
(3) 		1.1
(-3) 		1.2
(-2.9) 		4.9
(2.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 7.3
(-1.1)
A 		0.4
(-3)
A 		0.3
(-3)
A 		0.9
(-2.8)
A 		13.8
(0.7)
A 		22.3
(3)
P 		22
B 1.6
(-2.9)
A 		1.2
(-3)
A 		1.4
(-3)
A 		3
(-2.6)
A 		11.3
(-1)
A 		31.5
(3)
P 		30
C 3.7
(-2.6)
A 		9.4
(-1.8)
A 		1.2
(-3)
A 		13.2
(-1.2)
A 		8.7
(-1.9)
A 		41.8
(3)
P 		41
avr 4.2
(-2.4) 		3.7
(-2.5) 		1
(-3) 		5.7
(-2.1) 		11.3
(-1) 		31.9
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178122_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14074
Sequence Type Exemplar sequence
Representative Public ID F14H3.5 NCBI
Target Description F14H3.5 /REP_DB=WormBase Gene ID /WP=CE15830 /TR=O45361 /GB=CAB05481.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074638(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074638 NCBI Caenorhabditis elegans F14H3.5 (F14H3.5) mRNA, complete cds. 11/11 None
SNAP00000013822 ENSEMBL cdna:SNAP chromosome:CEL140:V:16058669:16059620:-1 9/11 None
GENEFINDER00000013837 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16058669:16059620:-1 11/11 None
F14H3.5 ENSEMBL cdna:known chromosome:CEL140:V:16058669:16059620:-1 gene:F14H3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16058668-16059620(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14H3.5
Entrez Gene 184491 Entrez gene
SwissProt O45361 EMBL-EBI
WormBase CE15830 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05481 Hypothetical protein F14H3.5 [Caenorhabditis elegans] ref|NP_507039.1| F14H3.5 [Caenorhabditis elegans] 1.0E-104
blast CAB05481 Hypothetical protein F14H3.5 [Caenorhabditis elegans] ref|NP_507039.1| F14H3.5 [Caenorhabditis elegans] 1.0E-96
blast CAB05486 Hypothetical protein F14H3.4 [Caenorhabditis elegans] ref|NP_507038.1| F14H3.4 [Caenorhabditis elegans] 3.0E-34
blast CAB05486 Hypothetical protein F14H3.4 [Caenorhabditis elegans] ref|NP_507038.1| F14H3.4 [Caenorhabditis elegans] 1.0E-31
Sequence
Target Sequence 
>C. ELEGANS:178122_AT
gatgcggaaaacaccttcaactccattcagaggtgtaccaccacgctgaaggggtttcaa
aagagctatgacgaattgaaactgcaaagaaaacaaagtcttcaaaccattcgacaacac
gaagcagatatacaacaacttgaacagggcataagagtacatacagcggcatttcaactg
ttacgaagactgcttagcgaaattagaagaccaaaccaaattctgcaagaggcactgcaa
gcgcgtcacatagagattgaagcgtttgatgatgaggcagaacggctcaatgtattaatt
gtagaagagagaaggaatttggtcgaacttcaagctgcaagaaagatcagaaagagttat
ctcattgtatttcaaaaacaaattgctcaactcaaagcagagaacaaagatgaagaagcg
actcctgctcaagaacaaatgacaaaaaaatctctgaaacgccgcagggatgatgaggat
gacgagacaggtccaagtgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCGGAAAACACCTTCAACTCCA 133 385 70 Antisense
ACTCCATTCAGAGGTGTACCACCAC 346 99 89 Antisense
GTACCACCACGCTGAAGGGGTTTCA 474 457 104 Antisense
AAGTCTTCAAACCATTCGACAACAC 58 159 165 Antisense
GAGTACATACAGCGGCATTTCAACT 326 399 224 Antisense
AACTGTTACGAAGACTGCTTAGCGA 205 141 245 Antisense
GCACTGCAAGCGCGTCACATAGAGA 537 315 301 Antisense
GAATTTGGTCGAACTTCAAGCTGCA 684 325 384 Antisense
GAAGAAGCGACTCCTGCTCAAGAAC 203 341 481 Antisense
AAATCTCTGAAACGCCGCAGGGATG 110 119 517 Antisense
GATGACGAGACAGGTCCAAGTGCTC 415 411 547 Antisense
Sequence Source Affymetrix Proprietary Database