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[178121_at] 7TM chemoreceptor, srw family

Description K03D7.2 /REP_DB=WormBase Gene ID /WP=CE18844 /TR=O62300 /GB=CAB04560.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 08      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.3
(-1.4)
A 		4.4
(-1.4)
A 		2.3
(-3)
A 		10
(3)
A 		8
B 5
(-1.6)
A 		3.7
(-3)
A 		9.4
(3)
A 		3.9
(-2.8)
A 		6
C 2
(-3)
A 		3.2
(-1.5)
A 		4.3
(-0.1)
A 		6.8
(3)
A 		5
avr 3.8
(-3) 		3.8
(-3) 		5.3
(-0.1) 		6.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.7
(-1.8)
A 		11.1
(3)
A 		2.3
(-2.7)
A 		2.1
(-2.8)
A 		3.6
(-1.8)
A 		1.8
(-3)
A 		9
B 2.8
(0.3)
A 		2.2
(-1)
A 		4
(3)
A 		2.1
(-1.2)
A 		1.4
(-2.8)
A 		1.3
(-3)
A 		3
C 1.9
(-2.5)
A 		1.8
(-2.7)
A 		3.3
(1.4)
A 		3.9
(3)
A 		1.7
(-3)
A 		2.5
(-0.8)
A 		2
avr 2.8
(-1.3) 		5
(3) 		3.2
(-0.5) 		2.7
(-1.5) 		2.2
(-2.4) 		1.9
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.6
(3)
A 		1
(-0.6)
A 		0.6
(-3)
A 		1.5
(2.4)
A 		1
B 1.6
(0.4)
A 		0.9
(-2.6)
A 		2.2
(3)
A 		0.8
(-3)
A 		1
C 0.7
(-3)
A 		0.9
(-1.5)
A 		1.5
(3)
A 		1.2
(0.8)
A 		1
avr 1.3
(1.8) 		0.9
(-3) 		1.4
(3) 		1.2
(0.6) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.7
(-2.5)
A 		4
(3)
A 		0.5
(-2.8)
A 		0.5
(-2.8)
A 		1.1
(-1.8)
A 		0.4
(-3)
A 		4
B 1
(3)
A 		0.7
(-0.6)
A 		1
(3)
A 		0.6
(-1.8)
A 		0.6
(-1.8)
A 		0.5
(-3)
A 		1
C 0.7
(1)
A 		0.6
(-1)
A 		0.8
(3)
A 		0.8
(3)
A 		0.5
(-3)
A 		0.8
(3)
A 		0
avr 0.8
(-2) 		1.8
(3) 		0.8
(-2) 		0.6
(-3) 		0.7
(-2.5) 		0.6
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178121_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13551
Sequence Type Exemplar sequence
Representative Public ID K03D7.2 NCBI
Target Description K03D7.2 /REP_DB=WormBase Gene ID /WP=CE18844 /TR=O62300 /GB=CAB04560.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075034(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075034 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-31) (srw-31) mRNA, complete cds. 11/11 None
SNAP00000027359 ENSEMBL cdna:SNAP chromosome:CEL140:V:17509787:17510872:1 10/11 None
GENEFINDER00000027367 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17508386:17512790:1 11/11 None
K03D7.2 ENSEMBL cdna:known chromosome:CEL140:V:17509165:17511082:1 gene:K03D7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028880 1/11 Cross Hyb Matching Probes None
K10G4.9 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17509164-17511082(+) 100.0 100.0
chrV:17289959-17512790(+) 91.93 91.93
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-31
Ensembl K03D7.2
Entrez Gene 186943 Entrez gene
SwissProt O62300 EMBL-EBI
WormBase CE36445 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04560 Hypothetical protein K03D7.2 [Caenorhabditis elegans] ref|NP_507435.2| Serpentine Receptor, class W family member (srw-31) [Caenorhabditis elegans] 1.0E-177
blast CAB04560 Hypothetical protein K03D7.2 [Caenorhabditis elegans] ref|NP_507435.2| Serpentine Receptor, class W family member (srw-31) [Caenorhabditis elegans] 1.0E-152
blast CAB04561 Hypothetical protein K03D7.11 [Caenorhabditis elegans] ref|NP_507436.1| Serpentine Receptor, class W family member (srw-32) [Caenorhabditis elegans] 1.0E-151
blast CAB04561 Hypothetical protein K03D7.11 [Caenorhabditis elegans] ref|NP_507436.1| Serpentine Receptor, class W family member (srw-32) [Caenorhabditis elegans] 1.0E-149
blast CAE17878 Hypothetical protein K10G4.9 [Caenorhabditis elegans] ref|NP_001024051.1| Serpentine Receptor, class W family member (srw-30) [Caenorhabditis elegans] 1.0E-108
blast CAE17878 Hypothetical protein K10G4.9 [Caenorhabditis elegans] ref|NP_001024051.1| Serpentine Receptor, class W family member (srw-30) [Caenorhabditis elegans] 3.0E-95
blast CAB04560 Hypothetical protein K03D7.2 [Caenorhabditis elegans] ref|NP_507435.2| Serpentine Receptor, class W family member (srw-31) [Caenorhabditis elegans] 8.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 5.2E-33
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 5.2E-33
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 5.2E-33
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 5.0E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507435.2 7 37-56,69-91,131-150,163-182,229-251,280-302,317-339
K03D7.2 7 37-56,69-91,131-150,163-182,229-251,280-302,317-339
SNAP00000027359 4 32-51,64-83,130-152,184-206
GENEFINDER00000027367 13 55-77,90-112,152-171,184-203,303-325,338-360,375-394,407-429,467-486,499-516,567-589,623-645,655-677
Sequence
Target Sequence 
>C. ELEGANS:178121_AT
gaatcgttgtattaatcaccctattaattattccatttggagcgcctagctatttcaagt
taaactccacatcagttagaggatggacgccattcacaaattgtgtaacattttcggaaa
attcgaccaaaatcaagttcgattctcactccactgaattgttcggaagcacagacgtat
acaaaatagctcttcttattgaaggaattttcttagaattcacgccatcaattatattac
cgattacaactataagtttgatcatggatttgagaaaagcacggaaaaactcactttcta
caaaaagctcggcaagtagcagtgatgctgtaagatctataaaactagtcgcttttgtga
caatcacatttttatttacaactacaccacttggctttatgtatattgttgggattttta
tagtcaagatgcctggcgtgattatgatagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGTTGTATTAATCACCCTATT 486 329 527 Antisense
TATTCCATTTGGAGCGCCTAGCTAT 625 659 555 Antisense
GAGCGCCTAGCTATTTCAAGTTAAA 357 383 566 Antisense
GGATGGACGCCATTCACAAATTGTG 175 515 607 Antisense
AAATCAAGTTCGATTCTCACTCCAC 700 115 656 Antisense
TTCTCACTCCACTGAATTGTTCGGA 185 689 669 Antisense
ATTGTTCGGAAGCACAGACGTATAC 253 3 684 Antisense
CACGCCATCAATTATATTACCGATT 302 199 747 Antisense
AAGCTCGGCAAGTAGCAGTGATGCT 305 149 831 Antisense
TCACATTTTTATTTACAACTACACC 71 629 890 Antisense
GATGCCTGGCGTGATTATGATAGTT 97 415 954 Antisense
Sequence Source Affymetrix Proprietary Database