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[178120_s_at]

Description C13C4.4 /REP_DB=WormBase Gene ID /WP=CE20504 /TR=O01926 /GB=CAB07315.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 90      6grp_total > 14      4grp_total > 46      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 136.4
(1.5)
P 		142.8
(3)
P 		128.4
(-0.4)
P 		117.4
(-3)
P 		25
B 181.9
(3)
P 		139.1
(-0.9)
P 		124
(-2.2)
P 		115.4
(-3)
P 		67
C 171.3
(2.8)
P 		140
(-2.4)
P 		136.6
(-3)
P 		172.7
(3)
P 		36
avr 163.2
(3) 		140.6
(-1) 		129.7
(-3) 		135.2
(-2) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 165.8
(-0.4)
P 		189
(3)
P 		161.9
(-1)
P 		167.9
(-0.1)
P 		148.1
(-3)
P 		151
(-2.6)
P 		41
B 169.6
(1.5)
P 		190.3
(3)
P 		107
(-3)
P 		168.7
(1.4)
P 		139.6
(-0.7)
P 		132.6
(-1.2)
P 		83
C 185.5
(3)
P 		158.2
(0.2)
P 		166
(1)
P 		144.7
(-1.2)
P 		127.4
(-3)
P 		157.9
(0.1)
P 		58
avr 173.6
(2.2) 		179.2
(3) 		145
(-2) 		160.4
(0.2) 		138.4
(-3) 		147.2
(-1.7) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 49.7
(3)
P 		31
(-0.5)
P 		33.6
(0)
P 		17.2
(-3)
P 		33
B 58
(3)
P 		34.3
(-1.3)
P 		28.7
(-2.3)
P 		24.6
(-3)
P 		33
C 56.7
(3)
P 		40.3
(-0.6)
P 		47.6
(1)
P 		29.1
(-3)
P 		28
avr 54.8
(3) 		35.2
(-0.8) 		36.6
(-0.5) 		23.6
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 30.6
(-3)
P 		67.2
(3)
P 		35.3
(-2.2)
P 		42.6
(-1)
P 		44.7
(-0.7)
P 		36.8
(-2)
P 		37
B 59
(2.3)
P 		63.4
(3)
P 		26
(-3)
P 		44.7
(0)
P 		56.7
(1.9)
P 		49.5
(0.8)
P 		37
C 68.8
(3)
P 		48.3
(-0.1)
P 		42.2
(-1)
P 		29.1
(-3)
P 		41.2
(-1.2)
P 		52.9
(0.6)
P 		40
avr 52.8
(1.4) 		59.6
(3) 		34.5
(-3) 		38.8
(-2) 		47.5
(0.1) 		46.4
(-0.2) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178120_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14083
Sequence Type Exemplar sequence
Representative Public ID C13C4.4 NCBI
Target Description C13C4.4 /REP_DB=WormBase Gene ID /WP=CE20504 /TR=O01926 /GB=CAB07315.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073639(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073639 NCBI Caenorhabditis elegans C13C4.4 (C13C4.4) mRNA, complete cds. 11/11 None
SNAP00000013562 ENSEMBL cdna:SNAP chromosome:CEL140:V:12111973:12113565:-1 10/11 None
GENEFINDER00000013568 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12111973:12113565:-1 11/11 None
C13C4.4 ENSEMBL cdna:known chromosome:CEL140:V:12111821:12113566:-1 gene:C13C4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12111972-12113565(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13C4.4
Entrez Gene 179661 Entrez gene
SwissProt O01926 EMBL-EBI
WormBase CE20504 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.19734.1.S1_AT similar to phospholysine phosphohistidine inorganic pyrophosphate phosphatase cfa
HG-U133_PLUS_2:218523_AT phospholysine phosphohistidine inorganic pyrophosphate phosphatase hs
HG-U133A:218523_AT phospholysine phosphohistidine inorganic pyrophosphate phosphatase hs
HG-FOCUS:218523_AT phospholysine phosphohistidine inorganic pyrophosphate phosphatase hs
HG-U133A_2:218523_AT phospholysine phosphohistidine inorganic pyrophosphate phosphatase hs
HU35KSUBB:RC_Z40192_AT phospholysine phosphohistidine inorganic pyrophosphate phosphatase hs
HU35KSUBC:RC_H74009_AT phospholysine phosphohistidine inorganic pyrophosphate phosphatase hs
U133_X3P:G11545850_3P_AT phospholysine phosphohistidine inorganic pyrophosphate phosphatase hs
HG-U95B:49423_AT phospholysine phosphohistidine inorganic pyrophosphate phosphatase hs
HG-U95C:61535_AT Phospholysine phosphohistidine inorganic pyrophosphate phosphatase hs
MG-U74AV2:103403_AT RIKEN cDNA 2310007H09 gene mm
MG-U74CV2:171164_R_AT RIKEN cDNA 2310007H09 gene mm
MOE430A:1452889_AT RIKEN cDNA 2310007H09 gene mm
MOUSE430A_2:1452889_AT RIKEN cDNA 2310007H09 gene mm
MOUSE430_2:1452889_AT RIKEN cDNA 2310007H09 gene mm
MU19KSUBB:TC31498_AT RIKEN cDNA 2310007H09 gene (2310007H09Rik), mRNA mm
MU19KSUBB:TC34823_AT RIKEN cDNA 2310007H09 gene (2310007H09Rik), mRNA mm
MU19KSUBB:TC34823_G_AT RIKEN cDNA 2310007H09 gene (2310007H09Rik), mRNA mm
RG-U34C:RC_AI233941_AT similar to phospholysine phosphohistidine inorganic pyrophosphate phosphata (5M590) rn
RAE230A:1372860_AT similar to phospholysine phosphohistidine inorganic pyrophosphate phosphata (5M590) rn
RAT230_2:1372860_AT similar to phospholysine phosphohistidine inorganic pyrophosphate phosphata (5M590) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07315 Hypothetical protein C13C4.4 [Caenorhabditis elegans] ref|NP_506040.1| C13C4.4 [Caenorhabditis elegans] 1.0E-152
blast CAE75395 Hypothetical protein CBG23384 [Caenorhabditis briggsae] 1.0E-147
blast CAB07315 Hypothetical protein C13C4.4 [Caenorhabditis elegans] ref|NP_506040.1| C13C4.4 [Caenorhabditis elegans] 1.0E-126
blast CAE75395 Hypothetical protein CBG23384 [Caenorhabditis briggsae] 1.0E-122
blast AAI06525 Unknown (protein for MGC:131278) [Xenopus laevis] 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 2.1E-19
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.8E-17
Sequence
Target Sequence 
>C. ELEGANS:178120_S_AT
aggaagacgtcataactccagctccagtggttgcacaatattgtcgagagaacaagcttc
gcccacatctgtttgtcagagacgatgtgcttgaatacttcgatggaatcgacacctcat
ctccgaattgtgttgtgatgggtgaagttgaagaaggtttctcattcgatcgaatcaaca
gagctttccgaattctcatcgacatgcctaaaccgcttctcataacaatgggcaatggaa
agttcttccaacgagttgatggtccgtgcattgatgtcggcgcttttgctgctgctctca
agttctcaactaattgtgaggttttgaacattggaaaaccaagccggttctatttcgagc
aaggaatgaatgcattgggtatgaaaccagaagaaattgtaatggttggcgacgatttga
tgtcggacgtaggcggtgctcaagcttgtggaatgcgaggtgttcaagtgagaactggta
aatggagaccagatttcgaaaagatgcccgtgactcctgatctcactgctgattgtctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAAGACGTCATAACTCCAGCTCC 298 55 230 Antisense
CTTCGCCCACATCTGTTTGTCAGAG 102 221 286 Antisense
TCGACACCTCATCTCCGAATTGTGT 569 601 338 Antisense
GAGCTTTCCGAATTCTCATCGACAT 61 389 410 Antisense
ATGCCTAAACCGCTTCTCATAACAA 642 37 433 Antisense
CGTGCATTGATGTCGGCGCTTTTGC 107 245 494 Antisense
AAGCCGGTTCTATTTCGAGCAAGGA 11 149 570 Antisense
TTGATGTCGGACGTAGGCGGTGCTC 388 705 646 Antisense
GGCGGTGCTCAAGCTTGTGGAATGC 19 541 661 Antisense
TTTCGAAAAGATGCCCGTGACTCCT 470 667 723 Antisense
TCCTGATCTCACTGCTGATTGTCTT 681 593 744 Antisense
Sequence Source Affymetrix Proprietary Database