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[178119_at]

Description F46B3.2 /REP_DB=WormBase Gene ID /WP=CE18685 /TR=Q9XV16 /GB=CAB04403.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 17.6
(3)
A 		8.4
(-1.8)
A 		6
(-3)
A 		16.2
(2.3)
A 		12
B 44.8
(0.9)
A 		5.5
(-3)
A 		6.8
(-2.9)
A 		66.2
(3)
A 		61
C 3.2
(-3)
A 		24.1
(1.3)
A 		5.9
(-2.4)
A 		32.3
(3)
A 		29
avr 21.9
(-0.1) 		12.7
(-1.8) 		6.2
(-3) 		38.2
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 7.9
(3)
A 		5.9
(0)
A 		4.1
(-2.7)
A 		7.9
(3)
A 		5.4
(-0.7)
A 		3.9
(-3)
A 		4
B 37.3
(3)
A 		7.1
(-2.6)
A 		29.1
(1.5)
A 		7.3
(-2.5)
A 		7.5
(-2.5)
A 		4.7
(-3)
A 		33
C 24.9
(-0.6)
A 		6.2
(-2.9)
A 		17
(-1.6)
A 		9.3
(-2.6)
A 		5.8
(-3)
A 		53
(3)
A 		47
avr 23.4
(3) 		6.4
(-2.9) 		16.7
(0.7) 		8.2
(-2.3) 		6.2
(-3) 		20.5
(2) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.4
(3)
A 		1.8
(-2.8)
A 		1.6
(-3)
A 		2.4
(-2)
A 		5
B 14.3
(3)
A 		1.4
(-3)
A 		1.6
(-2.9)
A 		14.1
(2.9)
A 		13
C 1.1
(-3)
A 		6.9
(3)
A 		2.1
(-2)
A 		5.5
(1.6)
A 		6
avr 7.3
(3) 		3.4
(-1.3) 		1.8
(-3) 		7.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.4
(-0.5)
A 		2.1
(3)
A 		0.9
(-3)
A 		2
(2.5)
A 		1.6
(0.5)
A 		0.9
(-3)
A 		1
B 13
(3)
A 		2.4
(-2.7)
A 		7.1
(-0.2)
A 		1.9
(-2.9)
A 		3
(-2.4)
A 		1.8
(-3)
A 		11
C 9.2
(-0.2)
A 		1.9
(-3)
A 		4.3
(-2.1)
A 		1.9
(-3)
A 		1.9
(-3)
A 		17.7
(3)
A 		16
avr 7.9
(3) 		2.1
(-2.8) 		4.1
(-0.8) 		1.9
(-3) 		2.2
(-2.7) 		6.8
(1.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13580
Sequence Type Exemplar sequence
Representative Public ID F46B3.2 NCBI
Target Description F46B3.2 /REP_DB=WormBase Gene ID /WP=CE18685 /TR=Q9XV16 /GB=CAB04403.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075573(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075573 NCBI Caenorhabditis elegans F46B3.2 (F46B3.2) mRNA, complete cds. 11/11 None
F46B3.2 ENSEMBL cdna:known chromosome:CEL140:V:20596559:20597543:-1 gene:F46B3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20596558-20597543(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46B3.2
Entrez Gene 185830 Entrez gene
SwissProt Q9XV16 EMBL-EBI
WormBase CE18685 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04403 Hypothetical protein F46B3.2 [Caenorhabditis elegans] ref|NP_507974.1| F46B3.2 [Caenorhabditis elegans] 5.0E-95
blast CAB04402 Hypothetical protein F46B3.1 [Caenorhabditis elegans] ref|NP_507973.1| F46B3.1 [Caenorhabditis elegans] 9.0E-65
blast CAE56270 Hypothetical protein CBG23915 [Caenorhabditis briggsae] 5.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.0
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.9
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.2E-5
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.6
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 0.0060
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.5E-10
Sequence
Target Sequence 
>C. ELEGANS:178119_AT
tctagccgagttttctgtcctagcgagatgtgatgaatgcgtggacaatctcatatcatg
ccaccagatatcagaccaatgtgatgattcgtttactaaattgcaagttttccagtttcg
ttcttgtgacaaatcatttttagcgaaaaaaaaaaagtacacttgcgggttgtgcaagaa
ggatccaaatgtgtgcagtgatacgtgtactgtgtgtccgatggatatgtcaccatgtga
aacagatcagtatcagaaaatttgcccgaaaacctgcaatgtctgtccgccagcaatctg
cgtggaccaatgggacaactgtccgttcttcaaaaattgccctctgagttgcggactttg
taccggcaatgtcactactccagcgactacaactagtactacgactccagttcctttaac
aacgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTAGCCGAGTTTTCTGTCCTAGCG 473 613 36 Antisense
TGCGTGGACAATCTCATATCATGCC 356 581 73 Antisense
TCATGCCACCAGATATCAGACCAAT 132 623 91 Antisense
GTTTTCCAGTTTCGTTCTTGTGACA 221 449 142 Antisense
ATACGTGTACTGTGTGTCCGATGGA 327 23 236 Antisense
GTCCGATGGATATGTCACCATGTGA 190 477 251 Antisense
GGACAACTGTCCGTTCTTCAAAAAT 102 527 348 Antisense
AAATTGCCCTCTGAGTTGCGGACTT 682 101 369 Antisense
GAGTTGCGGACTTTGTACCGGCAAT 479 397 381 Antisense
AACTAGTACTACGACTCCAGTTCCT 67 139 426 Antisense
GACTCCAGTTCCTTTAACAACGACA 35 375 438 Antisense
Sequence Source Affymetrix Proprietary Database