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[178118_at]

Description F47H4.4 /REP_DB=WormBase Gene ID /WP=CE19876 /TR=Q9XU25 /GB=CAB07211.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 3
(-2.2)
A 		3.3
(-1.7)
A 		2.5
(-3)
A 		6.2
(3)
A 		4
B 23.7
(0.8)
A 		3.7
(-3)
A 		35.3
(3)
A 		28.5
(1.7)
A 		32
C 20.5
(1.1)
A 		5.3
(-3)
A 		13.8
(-0.7)
A 		27.3
(3)
A 		22
avr 15.7
(1.2) 		4.1
(-3) 		17.2
(1.7) 		20.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.3
(-0.8)
A 		6.6
(2.4)
A 		7
(3)
A 		4.9
(0.1)
A 		3.6
(-1.7)
A 		2.7
(-3)
A 		4
B 12.4
(-0.4)
A 		5.2
(-2.1)
A 		18.3
(1)
A 		26.7
(3)
A 		2.3
(-2.8)
A 		1.4
(-3)
A 		25
C 4.6
(-2)
A 		18.8
(3)
A 		1.6
(-3)
A 		2.7
(-2.6)
A 		9.7
(-0.2)
A 		2.3
(-2.8)
A 		17
avr 7.1
(0.2) 		10.2
(2.2) 		9
(1.5) 		11.4
(3) 		5.2
(-1) 		2.1
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.1
(3)
A 		0.7
(-1.8)
A 		0.6
(-3)
A 		0.9
(0.6)
A 		1
B 7.6
(2.5)
A 		0.9
(-3)
A 		8.2
(3)
A 		6.1
(1.3)
A 		7
C 6.8
(3)
A 		1.5
(-3)
A 		4.8
(0.7)
A 		4.6
(0.5)
A 		5
avr 5.2
(3) 		1
(-3) 		4.5
(2) 		3.9
(1.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.8
(-2.6)
A 		2.3
(3)
A 		1.5
(0)
A 		1.2
(-1.1)
A 		1.1
(-1.5)
A 		0.7
(-3)
A 		2
B 4.3
(0.5)
A 		1.7
(-1.9)
A 		4.5
(0.6)
A 		7.1
(3)
A 		0.9
(-2.6)
A 		0.5
(-3)
A 		7
C 1.7
(-1.5)
A 		5.7
(3)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		3.2
(0.2)
A 		0.8
(-2.5)
A 		5
avr 2.3
(0.8) 		3.2
(3) 		2.1
(0.4) 		2.9
(2.3) 		1.7
(-0.6) 		0.7
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178118_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14337
Sequence Type Exemplar sequence
Representative Public ID F47H4.4 NCBI
Target Description F47H4.4 /REP_DB=WormBase Gene ID /WP=CE19876 /TR=Q9XU25 /GB=CAB07211.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074987(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074987 NCBI Caenorhabditis elegans F47H4.4 (F47H4.4) mRNA, complete cds. 11/11 None
SNAP00000022024 ENSEMBL cdna:SNAP chromosome:CEL140:V:17336937:17338123:1 11/11 None
GENEFINDER00000022038 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17333818:17338256:1 11/11 None
F47H4.4 ENSEMBL cdna:known chromosome:CEL140:V:17334217:17338123:1 gene:F47H4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17334216-17338123(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47H4.4
Entrez Gene 185951 Entrez gene
SwissProt Q9XU25 EMBL-EBI
WormBase CE19876 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07211 Hypothetical protein F47H4.4 [Caenorhabditis elegans] ref|NP_507388.1| F47H4.4 [Caenorhabditis elegans] 0.0
blast CAB63437 Hypothetical protein C38D9.6 [Caenorhabditis elegans] ref|NP_507448.1| C38D9.6 [Caenorhabditis elegans] 0.0
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 0.0
blast CAB07211 Hypothetical protein F47H4.4 [Caenorhabditis elegans] ref|NP_507388.1| F47H4.4 [Caenorhabditis elegans] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.2E-44
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.6E-8
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.2E-44
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.2E-44
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.6E-8
Sequence
Target Sequence 
>C. ELEGANS:178118_AT
tttgcatgattggtccatggttatgaaaaatcagaagcttaagctgaaagagttacagtt
tactcttgatgtagatttgggcgatcatcagaaactctataaaactatcaagactgtttt
agaaaattcaagctatttgaatgtagagaagatcacacttgaaggattttcagtcaggga
aattataaaaatacttcaacattgtaaatcaagaacactcgaagagattgtgctgggctc
actaactgataacaactatattgagaagttggttgatatgaaacaatggaaagaggcaag
ggttttcgaaagtagccggaactgtataatggcattgccaattgtgcatttgttacactt
ttcaaaatttgatgtttccatgcctgtatcagagtttggtgcgatgttgatccgaaatca
actgctgaagtccagtaattttgaacgtggatgcttcagaatgttgaactatgatcctat
gaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCATGATTGGTCCATGGTTATG 323 653 960 Antisense
GAGTTACAGTTTACTCTTGATGTAG 378 397 1009 Antisense
GATTTGGGCGATCATCAGAAACTCT 35 427 1033 Antisense
AGAACACTCGAAGAGATTGTGCTGG 500 73 1171 Antisense
GATTGTGCTGGGCTCACTAACTGAT 501 435 1185 Antisense
GCTGGGCTCACTAACTGATAACAAC 162 295 1191 Antisense
CCGGAACTGTATAATGGCATTGCCA 38 265 1275 Antisense
AATTTGATGTTTCCATGCCTGTATC 505 173 1325 Antisense
TCCATGCCTGTATCAGAGTTTGGTG 348 591 1336 Antisense
GAGTTTGGTGCGATGTTGATCCGAA 221 399 1351 Antisense
GAATGTTGAACTATGATCCTATGAA 525 329 1418 Antisense
Sequence Source Affymetrix Proprietary Database