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[178117_at]

Description T26E4.4 /REP_DB=WormBase Gene ID /WP=CE16476 /TR=O45839 /GB=CAB03434.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 41      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 5
(-3)
A 		80.5
(1.1)
A 		115.9
(3)
A 		57.6
(-0.2)
A 		111
B 3.8
(-3)
A 		114.1
(3)
A 		94.6
(1.9)
A 		33
(-1.4)
A 		110
C 16.1
(-3)
A 		105.9
(3)
A 		84
(1.5)
A 		88.9
(1.9)
A 		90
avr 8.3
(-3) 		100.2
(3) 		98.2
(2.9) 		59.8
(0.4) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 69.5
(-0.3)
A 		147.6
(3)
P 		141
(2.7)
A 		79.9
(0.2)
A 		41.3
(-1.4)
A 		4
(-3)
A 		144
B 97
(0.3)
A 		146.3
(2.7)
P 		152.9
(3)
A 		84.8
(-0.3)
A 		46.7
(-2.2)
A 		30
(-3)
A 		123
C 83.5
(0.6)
A 		134.6
(3)
M 		70.7
(0)
A 		81.4
(0.5)
A 		44
(-1.2)
A 		6.6
(-3)
A 		128
avr 83.3
(0.2) 		142.8
(3) 		121.5
(2) 		82
(0.2) 		44
(-1.6) 		13.5
(-3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 1.8
(-3)
A 		17.5
(0.3)
A 		30.3
(3)
A 		8.4
(-1.6)
A 		29
B 1.2
(-3)
A 		28.2
(3)
A 		21.9
(1.6)
A 		7
(-1.7)
A 		27
C 5.3
(-3)
A 		30.5
(3)
A 		29.3
(2.7)
A 		15
(-0.7)
A 		25
avr 2.8
(-3) 		25.4
(2.6) 		27.2
(3) 		10.1
(-1.2) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 12.8
(-1.6)
A 		52.5
(3)
P 		30.7
(0.5)
A 		20.3
(-0.8)
A 		12.5
(-1.7)
A 		1
(-3)
A 		52
B 33.8
(0.6)
A 		48.7
(3)
P 		37.1
(1.1)
A 		22.5
(-1.2)
A 		19
(-1.8)
A 		11.2
(-3)
A 		38
C 31
(1.4)
A 		41.1
(3)
M 		18
(-0.6)
A 		16.4
(-0.8)
A 		14.2
(-1.1)
A 		2.2
(-3)
A 		39
avr 25.9
(-0) 		47.4
(3) 		28.6
(0.4) 		19.7
(-0.9) 		15.2
(-1.5) 		4.8
(-3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13588
Sequence Type Exemplar sequence
Representative Public ID T26E4.4 NCBI
Target Description T26E4.4 /REP_DB=WormBase Gene ID /WP=CE16476 /TR=O45839 /GB=CAB03434.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074535(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074535 NCBI Caenorhabditis elegans T26E4.4 (T26E4.4) mRNA, complete cds. 11/11 None
GENEFINDER00000017606 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15792863:15795167:-1 9/11 None
T26E4.4 ENSEMBL cdna:known chromosome:CEL140:V:15793281:15795167:-1 gene:T26E4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074534 1/11 Cross Hyb Matching Probes A 
SNAP00000017595 4/11 Cross Hyb Matching Probes None
GENEFINDER00000017607 1/11 Cross Hyb Matching Probes None
T26E4.5 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15793280-15795167(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26E4.4
Entrez Gene 188930 Entrez gene
SwissProt O45839 EMBL-EBI
WormBase CE16476 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03434 Hypothetical protein T26E4.4 [Caenorhabditis elegans] ref|NP_506936.1| T26E4.4 [Caenorhabditis elegans] 0.0
blast CAB03440 Hypothetical protein T26E4.5 [Caenorhabditis elegans] ref|NP_506935.1| T26E4.5 [Caenorhabditis elegans] 1.0E-131
blast CAB16868 Hypothetical protein F08A8.5 [Caenorhabditis elegans] ref|NP_493265.1| F08A8.5 [Caenorhabditis elegans] 1.0E-118
blast CAB03440 Hypothetical protein T26E4.5 [Caenorhabditis elegans] ref|NP_506935.1| T26E4.5 [Caenorhabditis elegans] 1.0E-102
blast CAB16868 Hypothetical protein F08A8.5 [Caenorhabditis elegans] ref|NP_493265.1| F08A8.5 [Caenorhabditis elegans] 8.0E-95
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506936.1 2 4-21,42-64
T26E4.4 2 4-21,42-64
GENEFINDER00000017606 2 4-21,42-64
Sequence
Target Sequence 
>C. ELEGANS:178117_AT
catcacctccgttctgaaattcgtgaatggcttgcacctagtaaaatggcaaaacttgct
gcggagactgtattaacatcagagctcaaagaagatttgataatatgcacacatattcga
cgaggagatttccagactgacggagttcatcaaccatctgatcctaattttacacgtgct
gctacggattttttggtgaaacattaccaaaaatggcactatcgcaccactgttgtagtc
tttgggaatgatgtcaatttttcaaaagcagtttttgaagaccgagtttcaaattcttcg
gtcataccaaatcgcacgacacccccactcaacttcccaattcctgaaaactctcctaaa
tattcggtgattcttccacaaaattcaacaccagaaaatgatttggcattttccagacaa
gcaccatcatcaacttttggatggtggttatcatatttggcaaaacgttcagcagtctac
cttaggcctttctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCACCTCCGTTCTGAAATTCGTG 72 213 565 Antisense
AATTCGTGAATGGCTTGCACCTAGT 23 177 582 Antisense
CAGACTGACGGAGTTCATCAACCAT 661 203 697 Antisense
CTGATCCTAATTTTACACGTGCTGC 544 237 722 Antisense
AAAATGGCACTATCGCACCACTGTT 155 133 774 Antisense
ATCGCACCACTGTTGTAGTCTTTGG 682 35 785 Antisense
CGGTCATACCAAATCGCACGACACC 632 243 863 Antisense
CCAATTCCTGAAAACTCTCCTAAAT 231 275 901 Antisense
GCATTTTCCAGACAAGCACCATCAT 65 309 970 Antisense
TGGCAAAACGTTCAGCAGTCTACCT 663 543 1022 Antisense
AGCAGTCTACCTTAGGCCTTTCTGC 117 69 1035 Antisense
Sequence Source Affymetrix Proprietary Database