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[178116_at]

Description F11A5.1 /REP_DB=WormBase Gene ID /WP=CE15779 /TR=O17786 /GB=CAB07354.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 36      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 26.1
(0.1)
A
32.4
(1.2)
A
7.4
(-3)
A
43.4
(3)
A
36
B 25.7
(3)
A
5.8
(-2.6)
A
4.4
(-3)
A
6.4
(-2.4)
A
21
C 3.9
(-2.7)
A
45.1
(3)
A
1.8
(-3)
A
18.6
(-0.7)
A
43
avr 18.6
(0.6)
27.8
(3)
4.5
(-3)
22.8
(1.7)
23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 31.7
(0.5)
A
10.7
(-2.7)
A
18.9
(-1.5)
A
48.7
(3)
A
27.3
(-0.2)
A
8.7
(-3)
A
40
B 24.6
(3)
A
10.1
(-1.1)
A
24.2
(2.9)
A
5.3
(-2.5)
A
10.3
(-1)
A
3.4
(-3)
A
21
C 4.9
(-3)
A
24.1
(1.2)
A
29.5
(2.4)
A
32.4
(3)
A
14.3
(-0.9)
A
8.3
(-2.3)
A
28
avr 20.4
(0.7)
15
(-0.8)
24.2
(1.7)
28.8
(3)
17.3
(-0.1)
6.8
(-3)
22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.5
(3)
A
7
(1)
A
1.9
(-3)
A
6.4
(0.6)
A
8
B 8.2
(3)
A
1.4
(-2.7)
A
1
(-3)
A
1.4
(-2.7)
A
7
C 1.3
(-2.7)
A
13
(3)
A
0.6
(-3)
A
3.1
(-1.8)
A
12
avr 6.3
(2.2)
7.1
(3)
1.2
(-3)
3.6
(-0.6)
6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.8
(-0.8)
A
3.8
(-2)
A
4.1
(-1.8)
A
12.4
(3)
A
8.2
(0.6)
A
2.1
(-3)
A
10
B 8.6
(3)
A
3.4
(-1.3)
A
5.9
(0.8)
A
1.4
(-2.9)
A
4.2
(-0.6)
A
1.3
(-3)
A
7
C 1.8
(-3)
A
7.4
(2.9)
A
7.5
(3)
A
6.5
(1.9)
A
4.6
(-0.1)
A
2.8
(-1.9)
A
6
avr 5.4
(1.2)
4.9
(0.6)
5.8
(1.7)
6.8
(3)
5.7
(1.6)
2.1
(-3)
5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178116_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13483
Sequence Type Exemplar sequence
Representative Public ID F11A5.1 NCBI
Target Description F11A5.1 /REP_DB=WormBase Gene ID /WP=CE15779 /TR=O17786 /GB=CAB07354.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074680(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_074680 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-281) (srh-281) mRNA, complete cds. 11/11 None
SNAP00000026994 ENSEMBL cdna:SNAP chromosome:CEL140:V:16193368:16194845:1 11/11 None
F11A5.1 ENSEMBL cdna:known chromosome:CEL140:V:16193368:16194845:1 gene:F11A5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027014 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16193367-16194845(+) 99.32 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-281
Ensembl F11A5.1
Entrez Gene 184328 Entrez gene
SwissProt O17786 EMBL-EBI
WormBase CE15779 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07354 Hypothetical protein F11A5.1 [Caenorhabditis elegans] ref|NP_507081.1| Serpentine Receptor, class H family member (srh-281) [Caenorhabditis elegans] 0.0
blast CAB07355 Hypothetical protein F11A5.2 [Caenorhabditis elegans] ref|NP_507082.2| Serpentine Receptor, class H family member (srh-279) [Caenorhabditis elegans] 1.0E-150
blast CAB07355 Hypothetical protein F11A5.2 [Caenorhabditis elegans] ref|NP_507082.2| Serpentine Receptor, class H family member (srh-279) [Caenorhabditis elegans] 1.0E-147
blast CAE61106 Hypothetical protein CBG04863 [Caenorhabditis briggsae] 1.0E-131
blast CAE61106 Hypothetical protein CBG04863 [Caenorhabditis briggsae] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507081.1 5 15-37,114-133,148-167,258-277,287-306
F11A5.1 5 15-37,114-133,148-167,258-277,287-306
SNAP00000026994 6 15-37,50-72,92-114,135-154,243-265,272-294
Sequence
Target Sequence
>C. ELEGANS:178116_AT
gaatttcggaagctagacaccccggaaaacccgatatatgttctggttttggataaccca
tgggtttcggcaagacagattgcaatggaagtgacatacttaacagaggcgttgagttta
gtttttctgctgaagtataacatgaaaaacgcgacgaaaggggtgaaaatgtcagagaac
acttcaagattgcaaaaagcttttttgaaagccctgtatactcagacctccctcccgttc
atggtgatcctggttccatctgttgtatcaattttttctggaattctagaaatctcaacg
caaagtgtgaataatcttgtgtatattacactttcctgccatggattggcgtctaccacc
gttatgctattaattcaaaaaccatatcgagaattttgtttaggaatagtcggaaagtca
aaacggcgacagaaaatcactgccatatcgacaata


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GAATTTCGGAAGCTAGACACCCCGG 464 321 556 Antisense
CCCGGAAAACCCGATATATGTTCTG 491 259 576 Antisense
AACCCATGGGTTTCGGCAAGACAGA 250 147 610 Antisense
GTGACATACTTAACAGAGGCGTTGA 80 481 646 Antisense
GGCGTTGAGTTTAGTTTTTCTGCTG 484 541 663 Antisense
TGAAAGCCCTGTATACTCAGACCTC 245 573 761 Antisense
GGTTCCATCTGTTGTATCAATTTTT 372 507 807 Antisense
ATTACACTTTCCTGCCATGGATTGG 54 13 880 Antisense
CCTGCCATGGATTGGCGTCTACCAC 176 265 890 Antisense
CGTCTACCACCGTTATGCTATTAAT 461 245 905 Antisense
GAAAATCACTGCCATATCGACAATA 658 353 987 Antisense
Sequence Source Affymetrix Proprietary Database