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Cluster Members Consensus/Exemplar |
GeneChip Array Information |
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178116_at |
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C. elegans Genome Array |
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Nematode |
Probe Design Information |
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affy.Ce.13483
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Exemplar sequence
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F11A5.1 NCBI
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F11A5.1 /REP_DB=WormBase Gene ID /WP=CE15779 /TR=O17786 /GB=CAB07354.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
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Annotation Method Description |
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This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s). |
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This is a grade A annotation. |
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NM_074680(11) |
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NM_074680 NCBI |
Caenorhabditis elegans Serpentine Receptor, class H family member (srh-281) (srh-281) mRNA, complete cds. |
11/11 |
None |
SNAP00000026994 ENSEMBL |
cdna:SNAP chromosome:CEL140:V:16193368:16194845:1 |
11/11 |
None |
F11A5.1 ENSEMBL |
cdna:known chromosome:CEL140:V:16193368:16194845:1 gene:F11A5.1 |
11/11 |
None | |
GENEFINDER00000027014 |
7/11 |
Cross Hyb Matching Probes |
None | |
Genomic Alignment of Consensus/Exemplar Sequence |
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Wormbase March 2004 |
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|
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chrV:16193367-16194845(+) |
99.32 |
100.0 |
| |
Public Domain and Genome References |
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srh-281
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F11A5.1
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184328 Entrez gene
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O17786 EMBL-EBI
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CE15779 Wormbase
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Functional Annotations |
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5634 |
nucleus |
inferred from electronic annotation |
QuickGO AmiGO |
16020 |
membrane |
inferred from electronic annotation |
QuickGO AmiGO |
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|
|
|
3677 |
DNA binding |
inferred from electronic annotation |
QuickGO AmiGO |
4930 |
G-protein coupled receptor activity |
inferred from electronic annotation |
QuickGO AmiGO | |
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|
|
|
|
blast |
CAB07354 |
Hypothetical protein F11A5.1 [Caenorhabditis elegans] ref|NP_507081.1| Serpentine Receptor, class H family member (srh-281) [Caenorhabditis elegans] |
0.0 |
blast |
CAB07355 |
Hypothetical protein F11A5.2 [Caenorhabditis elegans] ref|NP_507082.2| Serpentine Receptor, class H family member (srh-279) [Caenorhabditis elegans] |
1.0E-150 |
blast |
CAB07355 |
Hypothetical protein F11A5.2 [Caenorhabditis elegans] ref|NP_507082.2| Serpentine Receptor, class H family member (srh-279) [Caenorhabditis elegans] |
1.0E-147 |
blast |
CAE61106 |
Hypothetical protein CBG04863 [Caenorhabditis briggsae] |
1.0E-131 |
blast |
CAE61106 |
Hypothetical protein CBG04863 [Caenorhabditis briggsae] |
1.0E-130 | |
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|
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Pfam |
IPR003003 EMBL-EBI |
7TM chemoreceptor, subfamily 2 |
1.0E-126 |
Pfam |
IPR003003 EMBL-EBI |
7TM chemoreceptor, subfamily 2 |
1.0E-126 |
NP_507081.1 |
5 |
15-37,114-133,148-167,258-277,287-306 |
F11A5.1 |
5 |
15-37,114-133,148-167,258-277,287-306 |
SNAP00000026994 |
6 |
15-37,50-72,92-114,135-154,243-265,272-294 | |
Sequence |
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>C. ELEGANS:178116_AT
gaatttcggaagctagacaccccggaaaacccgatatatgttctggttttggataaccca
tgggtttcggcaagacagattgcaatggaagtgacatacttaacagaggcgttgagttta
gtttttctgctgaagtataacatgaaaaacgcgacgaaaggggtgaaaatgtcagagaac
acttcaagattgcaaaaagcttttttgaaagccctgtatactcagacctccctcccgttc
atggtgatcctggttccatctgttgtatcaattttttctggaattctagaaatctcaacg
caaagtgtgaataatcttgtgtatattacactttcctgccatggattggcgtctaccacc
gttatgctattaattcaaaaaccatatcgagaattttgtttaggaatagtcggaaagtca
aaacggcgacagaaaatcactgccatatcgacaata
BLASTn GenBank NR |
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GAATTTCGGAAGCTAGACACCCCGG |
464 |
321 |
556 |
Antisense |
CCCGGAAAACCCGATATATGTTCTG |
491 |
259 |
576 |
Antisense |
AACCCATGGGTTTCGGCAAGACAGA |
250 |
147 |
610 |
Antisense |
GTGACATACTTAACAGAGGCGTTGA |
80 |
481 |
646 |
Antisense |
GGCGTTGAGTTTAGTTTTTCTGCTG |
484 |
541 |
663 |
Antisense |
TGAAAGCCCTGTATACTCAGACCTC |
245 |
573 |
761 |
Antisense |
GGTTCCATCTGTTGTATCAATTTTT |
372 |
507 |
807 |
Antisense |
ATTACACTTTCCTGCCATGGATTGG |
54 |
13 |
880 |
Antisense |
CCTGCCATGGATTGGCGTCTACCAC |
176 |
265 |
890 |
Antisense |
CGTCTACCACCGTTATGCTATTAAT |
461 |
245 |
905 |
Antisense |
GAAAATCACTGCCATATCGACAATA |
658 |
353 |
987 |
Antisense | |
|
Affymetrix Proprietary Database |