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[178115_at]

Description F59F5.5 /REP_DB=WormBase Gene ID /WP=CE03446 /TR=Q21048 /GB=CAA90659.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 45      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 170.2
(1.9)
P 		191
(3)
A 		115.4
(-0.9)
A 		73.6
(-3)
A 		117
B 213.5
(3)
P 		170.5
(0.7)
A 		100.2
(-3)
A 		103.6
(-2.8)
A 		113
C 213.6
(3)
P 		133.2
(-1.3)
P 		115.1
(-2.3)
A 		101.1
(-3)
A 		113
avr 199.1
(3) 		164.9
(1.1) 		110.2
(-2) 		92.8
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 151.5
(2.2)
A 		162.3
(3)
A 		93.4
(-1.9)
A 		102.5
(-1.3)
A 		160.8
(2.9)
A 		78.4
(-3)
A 		84
B 129.7
(2.1)
M 		145.6
(3)
A 		114.7
(1.2)
A 		104.1
(0.5)
A 		89.1
(-0.3)
A 		44.1
(-3)
A 		102
C 169.1
(3)
P 		164.8
(2.8)
A 		168.2
(3)
M 		72.4
(-1.3)
A 		104.5
(0.1)
A 		33.8
(-3)
A 		135
avr 150.1
(2.6) 		157.6
(3) 		125.4
(1.2) 		93
(-0.7) 		118.1
(0.8) 		52.1
(-3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 62
(3)
P 		41.5
(0.6)
A 		30.2
(-0.7)
A 		10.8
(-3)
A 		51
B 68.1
(3)
P 		42.1
(-0.4)
A 		23.2
(-2.9)
A 		22.1
(-3)
A 		46
C 70.7
(3)
P 		38.3
(-0.6)
P 		40.1
(-0.4)
A 		17.1
(-3)
A 		54
avr 66.9
(3) 		40.6
(-0.1) 		31.2
(-1.3) 		16.7
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 27.9
(-1.6)
A 		57.7
(3)
A 		20.4
(-2.8)
A 		26
(-1.9)
A 		48.5
(1.6)
A 		19.1
(-3)
A 		39
B 45.1
(2.4)
M 		48.5
(3)
A 		27.8
(-0.9)
A 		27.6
(-0.9)
A 		36.2
(0.7)
A 		16.4
(-3)
A 		32
C 62.7
(3)
P 		50.3
(1.6)
A 		42.8
(0.7)
M 		14.6
(-2.6)
A 		33.8
(-0.4)
A 		11.3
(-3)
A 		51
avr 45.2
(1.9) 		52.2
(3) 		30.3
(-0.6) 		22.7
(-1.8) 		39.5
(0.9) 		15.6
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178115_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16930
Sequence Type Exemplar sequence
Representative Public ID F59F5.5 NCBI
Target Description F59F5.5 /REP_DB=WormBase Gene ID /WP=CE03446 /TR=Q21048 /GB=CAA90659.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077366 NCBI Caenorhabditis elegans F59F5.5 (F59F5.5) mRNA, complete cds. 11/11 None
GENEFINDER00000005596 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10545952:10548888:1 11/11 None
SNAP00000005593 ENSEMBL cdna:SNAP chromosome:CEL140:X:10545988:10547508:1 11/11 None
F59F5.5 ENSEMBL cdna:known chromosome:CEL140:X:10545988:10547354:1 gene:F59F5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10545987-10547354(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59F5.5
Entrez Gene 186636 Entrez gene
SwissProt Q21048 EMBL-EBI
WormBase CE03446 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE60800 Hypothetical protein CBG04492 [Caenorhabditis briggsae] 1.0E-161
blast CAA90659 Hypothetical protein F59F5.5 [Caenorhabditis elegans] ref|NP_509767.1| F59F5.5 [Caenorhabditis elegans] 1.0E-82
blast CAA90659 Hypothetical protein F59F5.5 [Caenorhabditis elegans] ref|NP_509767.1| F59F5.5 [Caenorhabditis elegans] 7.0E-51
blast CAE60800 Hypothetical protein CBG04492 [Caenorhabditis briggsae] 7.0E-25
blast CAE58333 Hypothetical protein CBG01446 [Caenorhabditis briggsae] 2.0E-14
blast NP_504156 Y45G5AM.6 [Caenorhabditis elegans] gb|AAG23361.2| Hypothetical protein Y45G5AM.6 [Caenorhabditis elegans] 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:178115_AT
atgtcattcatgtctcacttattgcaaaacagttaatggaaaggtttggtggatccggtc
aattgcgactgtaaatcgccacctaatgagcaatgttcagcaaatgcatgctttgcaaaa
gtcgagctgttcgctgacgaatcaacagctattgttcagaaaggttgcatatcggatttc
ccgtccggacaaagaggctgtcaatatgcgagcaatatggatacaatacactgcttctgt
gatcaagaccaatgtaataccagacataagttgggtagctacattccgtcgcgccttcca
tccgtcgaatgctgtcattgcacttcccgtcatggtgaagattgcgattcgggatgctct
acaaattgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCATTCATGTCTCACTTATTGC 589 47 36 Antisense
GTGGATCCGGTCAATTGCGACTGTA 40 489 84 Antisense
AATCGCCACCTAATGAGCAATGTTC 320 167 109 Antisense
AAAGTCGAGCTGTTCGCTGACGAAT 611 121 153 Antisense
AGGTTGCATATCGGATTTCCCGTCC 159 51 197 Antisense
TTTCCCGTCCGGACAAAGAGGCTGT 689 669 212 Antisense
ACACTGCTTCTGTGATCAAGACCAA 9 109 263 Antisense
TAAGTTGGGTAGCTACATTCCGTCG 623 197 302 Antisense
GTCGAATGCTGTCATTGCACTTCCC 354 473 339 Antisense
ATTGCACTTCCCGTCATGGTGAAGA 232 5 352 Antisense
GATTCGGGATGCTCTACAAATTGTC 681 431 381 Antisense
Sequence Source Affymetrix Proprietary Database