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[178114_at]

Description F55F3.4 /REP_DB=WormBase Gene ID /WP=CE18747 /TR=Q9XUY3 /GB=CAB04479.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 56      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 3.3
(-3)
A 		49.6
(1.1)
A 		70.3
(3)
A 		5
(-2.8)
A 		67
B 3.4
(-3)
A 		12.7
(-1.7)
A 		47.2
(3)
A 		4.3
(-2.9)
A 		44
C 50.8
(2.1)
A 		32.1
(-0.3)
A 		58.3
(3)
A 		10.4
(-3)
A 		48
avr 19.2
(-1.5) 		31.5
(-0.1) 		58.6
(3) 		6.6
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 4.2
(-2.8)
A 		27.1
(0.7)
A 		41.5
(2.9)
A 		3.1
(-3)
A 		42.3
(3)
A 		21.3
(-0.2)
A 		39
B 7.4
(-3)
A 		7.6
(-2.9)
A 		18.8
(0.8)
A 		25.6
(3)
A 		11.7
(-1.6)
A 		19.7
(1.1)
A 		18
C 37.3
(1.9)
A 		40.6
(2.7)
A 		41.8
(3)
A 		28.3
(-0.3)
A 		17.6
(-3)
A 		22.5
(-1.8)
A 		24
avr 16.3
(-3) 		25.1
(-0) 		34
(3) 		19
(-2.1) 		23.9
(-0.4) 		21.2
(-1.3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 1.2
(-2.8)
A 		10.8
(0.4)
A 		18.4
(3)
A 		0.7
(-3)
A 		18
B 1.1
(-2.9)
A 		3.1
(-1.7)
A 		10.9
(3)
A 		0.9
(-3)
A 		10
C 16.8
(1.9)
A 		9.2
(-0.6)
A 		20.3
(3)
A 		1.7
(-3)
A 		19
avr 6.4
(-0.9) 		7.7
(-0.4) 		16.5
(3) 		1.1
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.8
(-3)
A 		9.6
(1.4)
A 		9
(1.1)
A 		0.8
(-3)
A 		12.8
(3)
A 		5.2
(-0.8)
A 		12
B 2.6
(-2.9)
A 		2.5
(-3)
A 		4.6
(-0.4)
A 		6.8
(2.4)
A 		4.8
(-0.1)
A 		7.3
(3)
A 		5
C 13.8
(3)
A 		12.4
(2)
A 		10.7
(0.7)
A 		5.7
(-3)
A 		5.7
(-3)
A 		7.5
(-1.7)
A 		8
avr 5.7
(-0.9) 		8.2
(3) 		8.1
(2.8) 		4.4
(-3) 		7.8
(2.4) 		6.7
(0.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178114_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17339
Sequence Type Exemplar sequence
Representative Public ID F55F3.4 NCBI
Target Description F55F3.4 /REP_DB=WormBase Gene ID /WP=CE18747 /TR=Q9XUY3 /GB=CAB04479.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077900(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077900 NCBI Caenorhabditis elegans F55F3.4 (F55F3.4) mRNA, complete cds. 11/11 None
F55F3.4 ENSEMBL cdna:known chromosome:CEL140:X:13785494:13789159:1 gene:F55F3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018557 8/11 Cross Hyb Matching Probes None
GENEFINDER00000018562 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13785493-13789159(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55F3.4
Entrez Gene 186318 Entrez gene
SwissProt Q9XUY3 EMBL-EBI
WormBase CE18747 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04479 Hypothetical protein F55F3.4 [Caenorhabditis elegans] ref|NP_510301.1| F55F3.4 [Caenorhabditis elegans] 0.0
blast CAE63084 Hypothetical protein CBG07373 [Caenorhabditis briggsae] 1.0E-109
Sequence
Target Sequence 
>C. ELEGANS:178114_AT
taacggtgggctctatcatgtcgaaaatcaacaaattcactttgtagccattccgttggg
aaacttggatcgaccgatttctattcgactaactaacatgggaacaaccacagtccaatt
atacgcatctttgtgttctcctcaggctgcaccaattcttctttggaacaaaaaactgac
cgtagccaatatcaagtttacgaaaaagcactatcatgaattagagcatttggcagtgtt
ggaatctgtgaaatgcaactcgacagcaatgaaaactttatttttctctattcgttccaa
gaacgcaagaggaaaaattattgtggataaggcgttgaatgagttttgcgacggaaaaac
gtgcaccagttggggaacaatgagatttttcaaaaacacaactgggttaattatagcgca
gtgtaagtttttatataaaaccttgctgattggatttttaaaactaagttttcccagtga
actattcttcctgtttcagaacttcacactccacttctgtgtccttccaaatcttgtctt
ccaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACGGTGGGCTCTATCATGTCGAA 96 639 2076 Antisense
AAATTCACTTTGTAGCCATTCCGTT 510 113 2108 Antisense
GGATCGACCGATTTCTATTCGACTA 328 513 2142 Antisense
GAACAACCACAGTCCAATTATACGC 274 353 2177 Antisense
ATTATACGCATCTTTGTGTTCTCCT 697 13 2193 Antisense
GGCTGCACCAATTCTTCTTTGGAAC 152 541 2220 Antisense
AAACTGACCGTAGCCAATATCAAGT 627 125 2248 Antisense
AAACGTGCACCAGTTGGGGAACAAT 218 125 2432 Antisense
CCCAGTGAACTATTCTTCCTGTTTC 476 257 2548 Antisense
TCCTGTTTCAGAACTTCACACTCCA 104 595 2564 Antisense
TCCTTCCAAATCTTGTCTTCCAAAC 596 591 2597 Antisense
Sequence Source Affymetrix Proprietary Database