[Home] | [Total List]

[178113_at]

Description F13D2.4 /REP_DB=WormBase Gene ID /WP=CE03196 /TR=Q19398 /GB=CAA90603.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 47      6grp_total > 47      4grp_total > 45      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 80.6
(3)
P 		69.5
(1.8)
A 		26.7
(-3)
P 		40.4
(-1.5)
A 		54
B 45.2
(-1.2)
A 		65.1
(3)
P 		46.3
(-1)
A 		37
(-3)
A 		28
C 86.3
(3)
P 		48.1
(-3)
P 		62.3
(-0.8)
P 		51.4
(-2.5)
M 		38
avr 70.7
(3) 		60.9
(0.9) 		45.1
(-2.5) 		42.9
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 146
(3)
P 		79.1
(-0.4)
P 		42.7
(-2.3)
P 		73.2
(-0.7)
P 		28.7
(-3)
M 		105.9
(0.9)
P 		117
B 74.9
(3)
P 		48.8
(-1.3)
P 		59.6
(0.5)
P 		52.7
(-0.6)
M 		38.3
(-3)
A 		67.3
(1.8)
P 		37
C 106.4
(0.2)
P 		49.1
(-3)
P 		111.3
(0.5)
P 		79.7
(-1.3)
P 		51.5
(-2.9)
P 		156.6
(3)
P 		108
avr 109.1
(2.9) 		59
(-1.3) 		71.2
(-0.3) 		68.5
(-0.5) 		39.5
(-3) 		109.9
(3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 29.4
(3)
P 		15.1
(-0.7)
A 		7
(-2.7)
P 		5.9
(-3)
A 		24
B 14.4
(1.8)
A 		16.1
(3)
P 		10.7
(-1)
A 		7.9
(-3)
A 		8
C 28.6
(3)
P 		13.8
(-1.5)
P 		21.7
(0.9)
P 		8.7
(-3)
M 		20
avr 24.1
(3) 		15
(-0.3) 		13.1
(-1) 		7.5
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 26.9
(2.6)
P 		28.1
(3)
P 		9.3
(-2.8)
P 		18.6
(0.1)
P 		8.6
(-3)
M 		25.8
(2.3)
P 		20
B 26.1
(3)
P 		16.2
(-1.9)
P 		14.5
(-2.8)
P 		14
(-3)
M 		15.6
(-2.2)
A 		25.1
(2.5)
P 		12
C 39.4
(0.9)
P 		15
(-3)
P 		28.3
(-0.9)
P 		16
(-2.8)
P 		16.7
(-2.7)
P 		52.4
(3)
P 		37
avr 30.8
(2) 		19.8
(-1.2) 		17.4
(-1.9) 		16.2
(-2.3) 		13.6
(-3) 		34.4
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178113_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16483
Sequence Type Exemplar sequence
Representative Public ID F13D2.4 NCBI
Target Description F13D2.4 /REP_DB=WormBase Gene ID /WP=CE03196 /TR=Q19398 /GB=CAA90603.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077466(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077466 NCBI Caenorhabditis elegans F13D2.4 (F13D2.4) mRNA, complete cds. 11/11 None
SNAP00000018362 ENSEMBL cdna:SNAP chromosome:CEL140:X:11187482:11189487:-1 11/11 None
F13D2.4 ENSEMBL cdna:known chromosome:CEL140:X:11188325:11189487:-1 gene:F13D2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11188324-11189487(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13D2.4
Entrez Gene 184415 Entrez gene
SwissProt Q19398 EMBL-EBI
WormBase CE03196 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE70688 Hypothetical protein CBG17405 [Caenorhabditis briggsae] 1.0E-117
blast CAA90603 Hypothetical protein F13D2.4 [Caenorhabditis elegans] ref|NP_509867.1| F13D2.4 [Caenorhabditis elegans] 8.0E-63
blast CAA90603 Hypothetical protein F13D2.4 [Caenorhabditis elegans] ref|NP_509867.1| F13D2.4 [Caenorhabditis elegans] 8.0E-61
blast CAE70688 Hypothetical protein CBG17405 [Caenorhabditis briggsae] 1.0E-40
Sequence
Target Sequence 
>C. ELEGANS:178113_AT
atcgacatttttaataattgcattcattacatgcaaagttactacaagcccagtcattgt
cttgccaccgttttttaaactacacggacaaaatgttatcacaatagtgaacgaaaagtc
cgttaaaacagttgttcaaattgatcacggaggagaaaaaacaaacaaagaaatacaagg
tgaacatcaaataatttcattccacacaagctcgagtcaatcatttgctcatattgtgat
taaggtcgatggagaagtcgaattggatcaaaatgttcccgttcgtccggatttgtttaa
tgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGACATTTTTAATAATTGCATTC 394 37 21 Antisense
ATGCAAAGTTACTACAAGCCCAGTC 190 43 51 Antisense
TACAAGCCCAGTCATTGTCTTGCCA 190 643 63 Antisense
TGTTCAAATTGATCACGGAGGAGAA 65 561 153 Antisense
AATAATTTCATTCCACACAAGCTCG 639 171 210 Antisense
TTCATTCCACACAAGCTCGAGTCAA 417 689 216 Antisense
AGCTCGAGTCAATCATTTGCTCATA 656 79 229 Antisense
TTGCTCATATTGTGATTAAGGTCGA 510 701 245 Antisense
GATGGAGAAGTCGAATTGGATCAAA 185 407 268 Antisense
GGATCAAAATGTTCCCGTTCGTCCG 204 509 285 Antisense
TTCGTCCGGATTTGTTTAATGTTCA 437 693 302 Antisense
Sequence Source Affymetrix Proprietary Database