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[178110_at]

Description C29E6.4 /REP_DB=WormBase Gene ID /WP=CE05335 /TR=Q18298 /GB=CAA96604.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 52.9
(-3)
P 		88.6
(3)
P 		58.5
(-2.1)
A 		64.5
(-1.1)
A 		36
B 44.4
(-3)
A 		106.1
(3)
P 		58.3
(-1.6)
A 		50.8
(-2.4)
A 		62
C 61.2
(-1.6)
A 		100.1
(3)
A 		49.1
(-3)
P 		83.8
(1.1)
A 		51
avr 52.8
(-3) 		98.3
(3) 		55.3
(-2.7) 		66.4
(-1.2) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 46.8
(0.5)
A 		51.3
(1.1)
A 		18.3
(-3)
A 		48.1
(0.7)
A 		66.6
(3)
P 		18.7
(-3)
A 		48
B 40.5
(-2.1)
A 		50.7
(-0.5)
A 		39.2
(-2.3)
A 		72.8
(3)
A 		35.1
(-3)
M 		41.4
(-2)
P 		38
C 64.8
(1.7)
A 		56.7
(1.1)
A 		4
(-3)
A 		81.5
(3)
P 		26.8
(-1.2)
A 		44.1
(0.1)
A 		78
avr 50.7
(0.9) 		52.9
(1.1) 		20.5
(-3) 		67.5
(3) 		42.8
(-0.2) 		34.7
(-1.2) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 19.3
(3)
P 		19.2
(2.9)
P 		15.3
(0.6)
A 		9.4
(-3)
A 		10
B 14.2
(-1.7)
A 		26.2
(3)
P 		13.5
(-1.9)
A 		10.8
(-3)
A 		15
C 20.3
(-0.5)
A 		28.8
(3)
A 		17.1
(-1.8)
P 		14.1
(-3)
A 		15
avr 17.9
(-0.1) 		24.7
(3) 		15.3
(-1.2) 		11.4
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 8.6
(-1.3)
A 		18.3
(2.3)
A 		4
(-3)
A 		12.2
(0.1)
A 		20.1
(3)
P 		4.6
(-2.8)
A 		16
B 14.1
(-0.2)
A 		16.9
(1.5)
A 		9.5
(-3)
A 		19.3
(3)
A 		14.3
(-0.1)
M 		15.4
(0.6)
P 		10
C 24
(3)
A 		17.3
(1.3)
A 		1
(-3)
A 		16.4
(1)
P 		8.7
(-1)
A 		14.8
(0.6)
A 		23
avr 15.6
(2.1) 		17.5
(3) 		4.8
(-3) 		16
(2.3) 		14.4
(1.5) 		11.6
(0.2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8359
Sequence Type Exemplar sequence
Representative Public ID C29E6.4 NCBI
Target Description C29E6.4 /REP_DB=WormBase Gene ID /WP=CE05335 /TR=Q18298 /GB=CAA96604.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069851(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069851 NCBI Caenorhabditis elegans C29E6.4 (C29E6.4) mRNA, complete cds. 11/11 None
SNAP00000002877 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11878589:11882953:1 9/11 None
GENEFINDER00000002882 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11879202:11884389:1 9/11 None
C29E6.4 ENSEMBL cdna:known chromosome:CEL140:IV:11879202:11882960:1 gene:C29E6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11879207-11882966(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29E6.4
Entrez Gene 183003 Entrez gene
SwissProt Q18298 EMBL-EBI
WormBase CE05335 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96604 Hypothetical protein C29E6.4 [Caenorhabditis elegans] ref|NP_502252.1| C29E6.4 [Caenorhabditis elegans] 0.0
blast CAE62139 Hypothetical protein CBG06184 [Caenorhabditis briggsae] 0.0
blast CAB05199 Hypothetical protein F52B11.3 [Caenorhabditis elegans] ref|NP_502699.1| F52B11.3 [Caenorhabditis elegans] 2.0E-28
blast CAB05199 Hypothetical protein F52B11.3 [Caenorhabditis elegans] ref|NP_502699.1| F52B11.3 [Caenorhabditis elegans] 2.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 8.5E-12
Pfam IPR003014 EMBL-EBI N/apple PAN 7.8E-17
Pfam IPR003014 EMBL-EBI N/apple PAN 7.1E-13
Pfam IPR003014 EMBL-EBI N/apple PAN 9.8E-20
Pfam IPR003014 EMBL-EBI N/apple PAN 1.1E-13
Pfam IPR003014 EMBL-EBI N/apple PAN 6.8E-12
Pfam IPR003014 EMBL-EBI N/apple PAN 7.8E-17
Pfam IPR003014 EMBL-EBI N/apple PAN 9.8E-20
Pfam IPR003014 EMBL-EBI N/apple PAN 1.1E-13
Pfam IPR003014 EMBL-EBI N/apple PAN 4.8E-18
Pfam IPR003014 EMBL-EBI N/apple PAN 9.8E-20
Pfam IPR003014 EMBL-EBI N/apple PAN 1.1E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000002877 1 881-903
GENEFINDER00000002882 1 842-864
Sequence
Target Sequence 
>C. ELEGANS:178110_AT
tcgaattgttgattgtaccgcccatcgagtcgggggaaccggacctcctgcatctgtgaa
tttaattgctgatggatgtgctcttcttccagcaatcatgtctccaatgaggctgacacc
ttctggatggcaatcttcactttcagcgttccgaattgatggatctgaacagatcgatgt
cgtgtgcataatctcgatttgtgacgagaataagaaatgtccactgatggcatgtacttc
tccggcgaatagggaacgggaggtacgctcaacctccgaggagaattcaattagagtcga
tcgacggttgctagtaaaaggcgataagaactatgcgggatcgcaaaagttctttgcacg
tgagttgcagacgcaggtcatcgagataacttttaaaagttttcagcaatctgcatcgaa
cccttcttctacattcctgccgttgcatttttccttctcagtcttgcctcaattctcgtg
tccattttcctatcgtttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAATTGTTGATTGTACCGCCCAT 385 601 2286 Antisense
GACCTCCTGCATCTGTGAATTTAAT 429 383 2327 Antisense
ATTGCTGATGGATGTGCTCTTCTTC 283 7 2350 Antisense
TTCTTCCAGCAATCATGTCTCCAAT 635 687 2369 Antisense
ATGAGGCTGACACCTTCTGGATGGC 519 45 2392 Antisense
TGGATGGCAATCTTCACTTTCAGCG 684 549 2409 Antisense
GATCGATGTCGTGTGCATAATCTCG 176 417 2457 Antisense
GTCCACTGATGGCATGTACTTCTCC 355 477 2504 Antisense
GTGAGTTGCAGACGCAGGTCATCGA 564 481 2645 Antisense
TTCAGCAATCTGCATCGAACCCTTC 296 669 2687 Antisense
TCGTGTCCATTTTCCTATCGTTTAG 575 603 2761 Antisense
Sequence Source Affymetrix Proprietary Database