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[178109_at]

Description C27H2.2 /REP_DB=WormBase Gene ID /WP=CE15640 /TR=O45268 /GB=CAB05122.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 71.6
(2.8)
A 		41.4
(0)
A 		9.2
(-3)
A 		73.5
(3)
A 		64
B 85.9
(3)
A 		10
(-3)
A 		67.4
(1.5)
A 		63.4
(1.2)
A 		76
C 103
(3)
A 		55.8
(-0)
A 		9.6
(-3)
A 		101.1
(2.9)
A 		93
avr 86.8
(3) 		35.7
(-2.3) 		28.7
(-3) 		79.3
(2.2) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 45.7
(-0.4)
A 		67.6
(1.3)
A 		15.2
(-2.6)
A 		42.8
(-0.6)
A 		9.9
(-3)
A 		91.1
(3)
A 		81
B 49.4
(3)
A 		36.2
(0.9)
A 		10.8
(-3)
A 		41.7
(1.8)
A 		22.6
(-1.2)
A 		23.9
(-1)
A 		39
C 44
(-0.1)
A 		32
(-0.9)
A 		2.5
(-3)
A 		13.9
(-2.2)
A 		41.8
(-0.3)
A 		88.5
(3)
A 		86
avr 46.4
(0.8) 		45.3
(0.7) 		9.5
(-3) 		32.8
(-0.6) 		24.8
(-1.4) 		67.8
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 26.1
(3)
A 		9
(-1.3)
A 		2.4
(-3)
A 		10.8
(-0.9)
A 		24
B 27.4
(3)
A 		2.5
(-3)
A 		15.6
(0.2)
A 		13.5
(-0.3)
A 		25
C 34.1
(3)
A 		16.1
(-0.5)
A 		3.4
(-3)
A 		17.1
(-0.3)
A 		31
avr 29.2
(3) 		9.2
(-2.4) 		7.1
(-3) 		13.8
(-1.2) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 8.4
(-1.5)
A 		24.1
(3)
A 		3.3
(-2.9)
A 		10.9
(-0.8)
A 		3
(-3)
A 		22.2
(2.5)
A 		21
B 17.2
(3)
A 		12
(0.9)
A 		2.6
(-3)
A 		11.1
(0.5)
A 		9.2
(-0.3)
A 		8.9
(-0.4)
A 		15
C 16.3
(0.2)
A 		9.8
(-1.1)
A 		0.6
(-3)
A 		2.8
(-2.5)
A 		13.5
(-0.3)
A 		29.6
(3)
A 		29
avr 14
(0.9) 		15.3
(1.4) 		2.2
(-3) 		8.3
(-1) 		8.6
(-0.9) 		20.2
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178109_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10329
Sequence Type Exemplar sequence
Representative Public ID C27H2.2 NCBI
Target Description C27H2.2 /REP_DB=WormBase Gene ID /WP=CE15640 /TR=O45268 /GB=CAB05122.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070279(10), NM_070278(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070279 NCBI Caenorhabditis elegans C27H2.3 (C27H2.3) mRNA, complete cds. 10/11 None
NM_070278 NCBI Caenorhabditis elegans C27H2.2 (C27H2.2) mRNA, complete cds. 11/11 None
GENEFINDER00000005813 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13952559:13963703:1 11/11 None
C27H2.2 ENSEMBL cdna:known chromosome:CEL140:IV:13952559:13953158:1 gene:C27H2.2 11/11 None
C27H2.3 ENSEMBL cdna:known chromosome:CEL140:IV:13952684:13963969:1 gene:C27H2.3 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005806 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13952564-13953164(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl C27H2.2
C27H2.3
Entrez Gene 178356 Entrez gene
182968 Entrez gene
SwissProt O45268 EMBL-EBI
O45269 EMBL-EBI
WormBase CE15640 Wormbase
CE15641 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05123 Hypothetical protein C27H2.3 [Caenorhabditis elegans] ref|NP_502680.1| C27H2.3 [Caenorhabditis elegans] 0.0
blast CAE74663 Hypothetical protein CBG22464 [Caenorhabditis briggsae] 0.0
blast CAE71779 Hypothetical protein CBG18780 [Caenorhabditis briggsae] 7.0E-86
blast CAE71779 Hypothetical protein CBG18780 [Caenorhabditis briggsae] 7.0E-68
blast CAB05122 Hypothetical protein C27H2.2 [Caenorhabditis elegans] ref|NP_502679.1| C27H2.2 [Caenorhabditis elegans] 7.0E-52
Sequence
Target Sequence 
>C. ELEGANS:178109_AT
tccactttcaacctttaaaattgatctaattaattttgacattaacggacggcccaccac
aacagacacattttcgaaaatggcgccaagcgacggaatgagctttgacagtgctcacca
aaagcgaactgaaggcgtttttcaatcactggctaagggatttaaatcatgcatcaacca
ctaccaatcagaagccacacggctccggacagaaatcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACTTTCAACCTTTAAAATTGAT 121 585 42 Antisense
CCACCACAACAGACACATTTTCGAA 489 273 95 Antisense
GAAAATGGCGCCAAGCGACGGAATG 61 353 117 Antisense
GCGACGGAATGAGCTTTGACAGTGC 117 289 131 Antisense
GAGCTTTGACAGTGCTCACCAAAAG 439 385 141 Antisense
AGTGCTCACCAAAAGCGAACTGAAG 688 59 151 Antisense
AAGGCGTTTTTCAATCACTGGCTAA 554 161 173 Antisense
AAATCATGCATCAACCACTACCAAT 166 117 205 Antisense
TCAACCACTACCAATCAGAAGCCAC 531 631 215 Antisense
ACCAATCAGAAGCCACACGGCTCCG 433 83 224 Antisense
CCACACGGCTCCGGACAGAAATCGC 467 275 236 Antisense
Sequence Source Affymetrix Proprietary Database