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[178108_at]

Description T27E7.1 /REP_DB=WormBase Gene ID /WP=CE16505 /TR=O45855 /GB=CAB05287.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 50      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 54
(-0.6)
A 		120.1
(3)
A 		114.3
(2.7)
M 		10.7
(-3)
A 		109
B 37.2
(-3)
A 		124.8
(3)
A 		71.8
(-0.6)
A 		80.2
(-0.1)
A 		88
C 73.5
(-0)
A 		91.2
(3)
P 		65.1
(-1.5)
A 		56.2
(-3)
A 		35
avr 54.9
(-2.4) 		112
(3) 		83.7
(0.3) 		49
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 992
1 2 3 4 5 6 range
A 26.5
(-2.9)
A 		8.6
(-3)
A 		88.9
(-2.5)
A 		129.7
(-2.3)
A 		459.5
(-0.3)
P 		1001
(3)
P 		992
B 15.4
(-3)
A 		28.3
(-2.9)
A 		82.1
(-2.3)
A 		115.3
(-1.9)
A 		560.3
(2.8)
P 		583.8
(3)
P 		568
C 69.5
(-2.5)
M 		9.7
(-3)
A 		57.8
(-2.6)
A 		80.1
(-2.4)
A 		569.9
(1.5)
P 		752
(3)
P 		742
avr 37.1
(-2.8) 		15.5
(-3) 		76.3
(-2.5) 		108.4
(-2.3) 		529.9
(1) 		778.9
(3) 		763
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 19.6
(0.8)
A 		26.1
(2.2)
A 		29.9
(3)
M 		1.6
(-3)
A 		28
B 11.8
(-3)
A 		30.8
(3)
A 		16.6
(-1.5)
A 		17.1
(-1.3)
A 		19
C 24.3
(2.3)
A 		26.2
(3)
P 		22.7
(1.7)
A 		9.5
(-3)
A 		17
avr 18.6
(0) 		27.7
(3) 		23.1
(1.5) 		9.4
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 4.9
(-3)
A 		3.1
(-3)
A 		19.4
(-2.6)
A 		32.9
(-2.3)
A 		138.6
(0.4)
P 		243.7
(3)
P 		241
B 5.4
(-3)
A 		9.4
(-2.9)
A 		19.9
(-2.6)
A 		30.5
(-2.3)
A 		227.6
(3)
P 		217.7
(2.7)
P 		222
C 25.8
(-2.4)
M 		3
(-3)
A 		14.7
(-2.7)
A 		16.1
(-2.7)
A 		184.4
(1.4)
P 		251.7
(3)
P 		249
avr 12
(-2.8) 		5.2
(-3) 		18
(-2.7) 		26.5
(-2.5) 		183.5
(1.6) 		237.7
(3) 		233
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178108_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10110
Sequence Type Exemplar sequence
Representative Public ID T27E7.1 NCBI
Target Description T27E7.1 /REP_DB=WormBase Gene ID /WP=CE16505 /TR=O45855 /GB=CAB05287.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070358(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070358 NCBI Caenorhabditis elegans T27E7.1 (T27E7.1) mRNA, complete cds. 11/11 None
SNAP00000042427 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14520088:14520934:1 9/11 None
GENEFINDER00000042440 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14519833:14520934:1 11/11 None
T27E7.1 ENSEMBL cdna:known chromosome:CEL140:IV:14519798:14520934:1 gene:T27E7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14519838-14520940(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27E7.1
Entrez Gene 178390 Entrez gene
SwissProt O45855 EMBL-EBI
WormBase CE16505 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05287 Hypothetical protein T27E7.1 [Caenorhabditis elegans] ref|NP_502759.1| T27E7.1 [Caenorhabditis elegans] 1.0E-102
blast CAB05287 Hypothetical protein T27E7.1 [Caenorhabditis elegans] ref|NP_502759.1| T27E7.1 [Caenorhabditis elegans] 2.0E-82
blast CAA22144 Hypothetical protein Y53C10A.10 [Caenorhabditis elegans] ref|NP_493042.1| Y53C10A.10 [Caenorhabditis elegans] 2.0E-28
blast CAA22144 Hypothetical protein Y53C10A.10 [Caenorhabditis elegans] ref|NP_493042.1| Y53C10A.10 [Caenorhabditis elegans] 4.0E-28
blast CAE61796 Hypothetical protein CBG05759 [Caenorhabditis briggsae] 1.0E-27
blast CAE61796 Hypothetical protein CBG05759 [Caenorhabditis briggsae] 2.0E-27
Sequence
Target Sequence 
>C. ELEGANS:178108_AT
gaaggacagtgccaaccagctagatggactcaacaaccgggtggccagaacccccagcca
ggtgcaagtttcccacccaacatgaaccctgtcacaaacggaccaggatcttggacacaa
aagcctggaggatacaacaatgggccaggatccggaagtttcaaatcaactaagccacca
cgaggactcgtctactatcagcccaagaactatccatacaagcctggaaaaggtggaaaa
tatatgcatgcggaccctatcctccccaacgcaaatgaacgactttcggctcaaagcgac
cagtacaccgtatccgacggaattacgggagactggagcaagattgtggcaaacagtaaa
ggattctatgtgcttcatccggtgcagacaaaaagcgaggaggacattttcgatccgtac
actattggtcaagtcattgggtacctttatgaggttcaagaatttggaggaaagaagccg
ccaagtggaaagtacacgattgagctgatgggcaaaaagattccggaccatttgaagaag
aagcgctcactgtttggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGACAGTGCCAACCAGCTAGAT 708 333 67 Antisense
TGGACTCAACAACCGGGTGGCCAGA 537 545 91 Antisense
ATGAACCCTGTCACAAACGGACCAG 515 23 148 Antisense
AATGGGCCAGGATCCGGAAGTTTCA 541 103 205 Antisense
ATCAACTAAGCCACCACGAGGACTC 515 25 231 Antisense
TATCCTCCCCAACGCAAATGAACGA 269 651 324 Antisense
GACTTTCGGCTCAAAGCGACCAGTA 623 369 347 Antisense
GACCAGTACACCGTATCCGACGGAA 560 377 364 Antisense
CTATGTGCTTCATCCGGTGCAGACA 480 223 432 Antisense
GACATTTTCGATCCGTACACTATTG 235 371 469 Antisense
AGAAGAAGCGCTCACTGTTTGGCTC 184 75 602 Antisense
Sequence Source Affymetrix Proprietary Database