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[178107_at]

Description ZK652.6 /REP_DB=WormBase Gene ID /WP=CE25693 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger protein
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 98      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 82      6grp_total > 95      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 345.5
(0.1)
P 		299.2
(-1.3)
P 		243.4
(-3)
P 		438.4
(3)
P 		195
B 369.6
(3)
P 		293.1
(-1.2)
P 		261.2
(-3)
P 		370
(3)
P 		109
C 378
(3)
P 		318.9
(-1.8)
P 		326.7
(-1.2)
P 		304.8
(-3)
P 		73
avr 364.4
(2.6) 		303.7
(-1.3) 		277.1
(-3) 		371.1
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 348.1
(-1.5)
P 		355
(-1.1)
P 		362.5
(-0.7)
P 		427.5
(3)
P 		322.4
(-3)
P 		395.3
(1.2)
P 		105
B 361.5
(-2.7)
P 		365.6
(-2.2)
P 		369.3
(-1.8)
P 		358.8
(-3)
P 		411.4
(3)
P 		390.7
(0.6)
P 		53
C 403.2
(2)
P 		348.5
(-3)
P 		349.7
(-2.9)
P 		356.1
(-2.3)
P 		413.8
(3)
P 		387.2
(0.6)
P 		65
avr 370.9
(-0.5) 		356.4
(-3) 		360.5
(-2.3) 		380.8
(1.2) 		382.5
(1.5) 		391.1
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 125.8
(3)
P 		64.9
(-2.9)
P 		63.6
(-3)
P 		64.2
(-2.9)
P 		62
B 117.9
(3)
P 		72.4
(-1.8)
P 		60.5
(-3)
P 		78.9
(-1.1)
P 		57
C 125.1
(3)
P 		91.7
(0.3)
P 		113.9
(2.1)
P 		51.4
(-3)
P 		74
avr 122.9
(3) 		76.3
(-1.8) 		79.3
(-1.5) 		64.8
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 64.2
(-3)
P 		126.2
(3)
P 		78.9
(-1.6)
P 		108.4
(1.3)
P 		97.3
(0.2)
P 		96.3
(0.1)
P 		62
B 125.8
(-0.2)
P 		121.7
(-0.5)
P 		89.7
(-3)
P 		95
(-2.6)
P 		167.1
(3)
P 		145.7
(1.3)
P 		77
C 149.5
(3)
P 		106.3
(-0.3)
P 		89
(-1.7)
P 		71.6
(-3)
P 		133.9
(1.8)
P 		129.6
(1.5)
P 		78
avr 113.2
(0.5) 		118.1
(1.1) 		85.9
(-3) 		91.7
(-2.3) 		132.8
(3) 		123.9
(1.9) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178107_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7159
Sequence Type Exemplar sequence
Representative Public ID ZK652.6 NCBI
Target Description ZK652.6 /REP_DB=WormBase Gene ID /WP=CE25693 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027857(11), NM_001027858(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027857 NCBI Caenorhabditis elegans ZK652.6a (ZK652.6) mRNA, complete cds. 11/11 None
NM_001027858 NCBI Caenorhabditis elegans ZK652.6b (ZK652.6) mRNA, complete cds. 11/11 None
GENEFINDER00000029640 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7829349:7832242:1 11/11 None
SNAP00000029622 ENSEMBL cdna:SNAP chromosome:CEL140:III:7829424:7832242:1 11/11 None
ZK652.6a.2 ENSEMBL cdna:known chromosome:CEL140:III:7829331:7832415:1 gene:ZK652.6 11/11 None
ZK652.6a.3 ENSEMBL cdna:known chromosome:CEL140:III:7829333:7832415:1 gene:ZK652.6 11/11 None
ZK652.6a.1 ENSEMBL cdna:known chromosome:CEL140:III:7829334:7832415:1 gene:ZK652.6 11/11 None
ZK652.6b ENSEMBL cdna:known chromosome:CEL140:III:7831122:7832242:1 gene:ZK652.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7829346-7832240(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK652.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28219 Hypothetical protein ZK652.6a [Caenorhabditis elegans] ref|NP_001023028.1| ZK652.6a [Caenorhabditis elegans] sp|P34664|YOY6_CAEEL Hypothetical protein ZK652.6 in chromosome III 0.0
blast S44908 ZK652.5 protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 7.8E-23
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 1.7E-19
Sequence
Target Sequence 
>C. ELEGANS:178107_AT
aatgctgctcaagtgacgactacgtctgattccgaaggtgatccgggttggttgccactt
tcattcgaaacaactccaattcgatcaactggatgtggaggttattggtctgacaaacga
tttcttcgacccagaaaaatgcaacgtgagcaatctgtagctagttcgaatgctgaaatt
atggaaaaagctgaaatcgcgttggctctgatacgagcttcttgccttcatgagcccgtt
tttactgatccaacaaagcctgatatcgcattaaaggaggctctccagcatctacggcta
ggagaaaaaccggcaaaaatgatggaatatcaagcagcggaggaacttgtcaatatgccg
gaacgagacccaattaccactggagaaatggaagttgaaattcccgattttacagcgaga
ggatatggacaaattgtagacggaaatattccacttggtgtcgttccagaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCTGCTCAAGTGACGACTACGT 527 163 1132 Antisense
GACGACTACGTCTGATTCCGAAGGT 709 361 1146 Antisense
CGAAGGTGATCCGGGTTGGTTGCCA 148 253 1164 Antisense
TGACAAACGATTTCTTCGACCCAGA 709 571 1242 Antisense
GCTGAAATCGCGTTGGCTCTGATAC 362 295 1321 Antisense
GCTCTGATACGAGCTTCTTGCCTTC 701 299 1336 Antisense
TCATGAGCCCGTTTTTACTGATCCA 690 619 1359 Antisense
GCTCTCCAGCATCTACGGCTAGGAG 526 299 1411 Antisense
GGAACTTGTCAATATGCCGGAACGA 62 529 1473 Antisense
GGAACGAGACCCAATTACCACTGGA 528 527 1491 Antisense
TTCCACTTGGTGTCGTTCCAGAGGC 622 697 1580 Antisense
Sequence Source Affymetrix Proprietary Database