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[178106_at]

Description Y60A9.2 /REP_DB=WormBase Gene ID /WP=CE24535 /TR=Q9U1Y3 /GB=CAB60409.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 54
(-0.5)
A 		117.3
(3)
A 		67.2
(0.2)
A 		8.9
(-3)
A 		108
B 61.5
(0.1)
A 		63.2
(0.2)
A 		105.1
(3)
A 		15.9
(-3)
A 		89
C 70.8
(-0.6)
P 		76.3
(0)
A 		48.4
(-3)
A 		103.3
(3)
A 		55
avr 62.1
(-0.3) 		85.6
(3) 		73.6
(1.3) 		42.7
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 47.9
(-0.6)
A 		32.1
(-3)
A 		53
(0.2)
A 		32.6
(-2.9)
A 		54.2
(0.4)
A 		71.5
(3)
A 		39
B 57.1
(1.2)
A 		51.3
(0.3)
A 		68.9
(3)
A 		29.9
(-3)
A 		33.5
(-2.4)
A 		44.3
(-0.8)
A 		39
C 23
(-3)
A 		75.4
(3)
A 		46.5
(-0.3)
A 		59.9
(1.2)
A 		70.3
(2.4)
A 		40.1
(-1)
A 		52
avr 42.7
(-2.3) 		52.9
(1.7) 		56.1
(3) 		40.8
(-3) 		52.7
(1.7) 		52
(1.4) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 19.6
(1.5)
A 		25.5
(3)
A 		17.6
(1)
A 		1.3
(-3)
A 		24
B 19.6
(1.7)
A 		15.6
(0.5)
A 		24.3
(3)
A 		3.4
(-3)
A 		21
C 23.5
(3)
P 		21.9
(1.5)
A 		16.9
(-3)
A 		17.4
(-2.5)
A 		7
avr 20.9
(3) 		21
(3) 		19.6
(2.4) 		7.4
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.8
(-2.7)
A 		11.4
(-1)
A 		11.5
(-0.9)
A 		8.3
(-3)
A 		16.3
(2.3)
A 		17.4
(3)
A 		9
B 19.9
(3)
A 		17.1
(1.6)
A 		16.7
(1.4)
A 		7.9
(-3)
A 		13.6
(-0.2)
A 		16.5
(1.3)
A 		12
C 8.5
(-3)
A 		23
(3)
A 		11.8
(-1.6)
A 		12
(-1.6)
A 		22.8
(2.9)
A 		13.4
(-1)
A 		15
avr 12.4
(-0.8) 		17.2
(2.7) 		13.3
(-0.1) 		9.4
(-3) 		17.6
(3) 		15.8
(1.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178106_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17439
Sequence Type Exemplar sequence
Representative Public ID Y60A9.2 NCBI
Target Description Y60A9.2 /REP_DB=WormBase Gene ID /WP=CE24535 /TR=Q9U1Y3 /GB=CAB60409.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y60A9.2 ENSEMBL cdna:known chromosome:CEL140:X:14381208:14381810:-1 gene:Y60A9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029949 7/11 Cross Hyb Matching Probes None
SNAP00000029943 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14381207-14381810(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y60A9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05191 Hypothetical protein F38C2.5 [Caenorhabditis elegans] ref|NP_502931.1| F38C2.5 [Caenorhabditis elegans] 1.0E-60
blast CAB16528 Hypothetical protein Y57G11C.25 [Caenorhabditis elegans] ref|NP_502805.1| Y57G11C.25 [Caenorhabditis elegans] 1.0E-40
blast AAU82119 POS-1 [Caenorhabditis remanei] 4.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 7.1E-12
Sequence
Target Sequence 
>C. ELEGANS:178106_AT
taatccacttgctgttgatgtcccaactgctaccaaattgcacaatgttgctcaatggcg
ctcaatggctcttccagcagccaccttctccaagactccattcatgaagatagaaaactc
ttgcacaattcctgacgatctccacgaagaaatgatgagattgaaaagagaagaaaatgc
attcaaaacggctctttgcaagacgtttcagctcacacggacatgctcagggagcaatgc
aaatttgctcacaaatcgtggagtcaaccacccaaaatataaaactatgctttgtgacaa
tttctctagaactggacactgcaaatatgggacaaagtgtcagtttattcacagatctgt
tgagccaactccagcgcaaaatccattgctacaccagttttctctgtggtttgctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCCACTTGCTGTTGATGTCCCA 631 633 18 Antisense
GTTGATGTCCCAACTGCTACCAAAT 482 437 31 Antisense
GCACAATGTTGCTCAATGGCGCTCA 123 317 57 Antisense
CCTTCTCCAAGACTCCATTCATGAA 646 269 101 Antisense
AGAAAACTCTTGCACAATTCCTGAC 302 73 129 Antisense
AGCTCACACGGACATGCTCAGGGAG 553 79 227 Antisense
ATTTGCTCACAAATCGTGGAGTCAA 526 17 260 Antisense
TAAAACTATGCTTTGTGACAATTTC 68 641 297 Antisense
CCAACTCCAGCGCAAAATCCATTGC 329 277 382 Antisense
AAATCCATTGCTACACCAGTTTTCT 219 119 396 Antisense
ACCAGTTTTCTCTGTGGTTTGCTCC 568 85 410 Antisense
Sequence Source Affymetrix Proprietary Database