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[178104_at]

Description W06D4.2 /REP_DB=WormBase Gene ID /WP=CE16544 /TR=Q9XW44 /GB=CAA22250.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 05      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 44.6
(-1.4)
A 		27.6
(-2.2)
A 		10.4
(-3)
A 		141.1
(3)
A 		131
B 19.6
(-2)
A 		5.7
(-2.9)
A 		4.6
(-3)
A 		97.3
(3)
A 		93
C 66.9
(2.6)
A 		5.8
(-3)
A 		15
(-2.2)
A 		70.9
(3)
A 		65
avr 43.7
(-0.8) 		13
(-2.8) 		10
(-3) 		103.1
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 5.3
(-3)
A 		20.5
(-2.7)
A 		10
(-2.9)
A 		78.1
(-1.7)
A 		262.7
(1.5)
P 		348.4
(3)
P 		343
B 11.3
(-3)
A 		22.1
(-2.8)
A 		41.6
(-2.4)
A 		70.3
(-1.8)
A 		270.2
(2.3)
P 		306.9
(3)
P 		296
C 9.7
(-3)
A 		14.2
(-2.9)
A 		11.2
(-3)
A 		77.4
(-1.7)
A 		238.1
(1.4)
M 		320.1
(3)
P 		310
avr 8.8
(-3) 		18.9
(-2.8) 		20.9
(-2.8) 		75.3
(-1.7) 		257
(1.7) 		325.1
(3) 		316
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 16.2
(1.5)
A 		6
(-1.9)
A 		2.7
(-3)
A 		20.6
(3)
A 		18
B 6.3
(-1.4)
A 		1.4
(-2.9)
A 		1.1
(-3)
A 		20.7
(3)
A 		20
C 22.2
(3)
A 		1.7
(-3)
A 		5.2
(-2)
A 		12
(0)
A 		21
avr 14.9
(1.8) 		3
(-3) 		3
(-3) 		17.8
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 1
(-3)
A 		7.3
(-2.5)
A 		2.2
(-2.9)
A 		19.8
(-1.7)
A 		79.3
(2.6)
P 		84.8
(3)
P 		84
B 3.9
(-3)
A 		7.4
(-2.8)
A 		10.1
(-2.7)
A 		18.6
(-2.2)
A 		109.8
(2.8)
P 		114.4
(3)
P 		111
C 3.6
(-3)
A 		4.3
(-2.9)
A 		2.8
(-3)
A 		15.6
(-2.3)
A 		77
(1.3)
M 		107.2
(3)
P 		104
avr 2.8
(-3) 		6.3
(-2.8) 		5
(-2.9) 		18
(-2.1) 		88.7
(2.2) 		102.1
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178104_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2458
Sequence Type Exemplar sequence
Representative Public ID W06D4.2 NCBI
Target Description W06D4.2 /REP_DB=WormBase Gene ID /WP=CE16544 /TR=Q9XW44 /GB=CAA22250.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060033 NCBI Caenorhabditis elegans W06D4.2 (W06D4.2) mRNA, complete cds. 11/11 None
SNAP00000003037 ENSEMBL cdna:SNAP chromosome:CEL140:I:9064543:9065891:1 11/11 None
GENEFINDER00000003044 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9064543:9065891:1 11/11 None
W06D4.2 ENSEMBL cdna:known chromosome:CEL140:I:9064543:9065679:1 gene:W06D4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9064473-9065610(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06D4.2
Entrez Gene 189238 Entrez gene
SwissProt Q9XW44 EMBL-EBI
WormBase CE16544 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22250 Hypothetical protein W06D4.2 [Caenorhabditis elegans] ref|NP_492434.1| W06D4.2 [Caenorhabditis elegans] 1.0E-126
blast CAA22250 Hypothetical protein W06D4.2 [Caenorhabditis elegans] ref|NP_492434.1| W06D4.2 [Caenorhabditis elegans] 1.0E-125
blast CAE67029 Hypothetical protein CBG12430 [Caenorhabditis briggsae] 1.0E-119
blast CAE67029 Hypothetical protein CBG12430 [Caenorhabditis briggsae] 1.0E-117
blast CAE67029 Hypothetical protein CBG12430 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492434.1 6 84-106,111-133,146-164,174-196,203-222,226-248
W06D4.2 6 84-106,111-133,146-164,174-196,203-222,226-248
SNAP00000003037 6 84-106,111-133,146-168,202-224,226-248,263-282
GENEFINDER00000003044 6 84-106,111-133,146-168,202-224,226-248,263-285
Sequence
Target Sequence 
>C. ELEGANS:178104_AT
agaagtcgctgagccagctgcttatgatgctcgagactatgtgaatcagtcactggcaga
gaatagtccattggaagtgattgatacagagacgaagaatagcttggttgagatgtatct
tggaatctcagtcattttgattggtttggctggaggtcaactctccggtgcatatgcatt
gactccacttattcaatacgtcttcgatacttctgtcgtttctctgatccttgctgcatt
gccagtttacatctactacagtattcgcaagaattccagtttggatgacactgaaagacg
tagtattctattctcctcaactctattcttcggaatcttcagtggatatctttttggtcc
acgtatgctttcacttgctccaacaactattttccttccaccattcatgtttgctttgtt
gttcgacaatggaattcttccgacgcctttggtttctctcaatcgtcaaagtttcttcat
cgcttttgcttccatcagcgtcttcattaccactttccttgcatcaatcgtcttgggtag
tttctctattgtgatttcgctgttcaatatcgttcacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGTCGCTGAGCCAGCTGCTTAT 155 75 147 Antisense
GTTTGGCTGGAGGTCAACTCTCCGG 586 451 290 Antisense
GCATATGCATTGACTCCACTTATTC 659 307 316 Antisense
GTCTTCGATACTTCTGTCGTTTCTC 169 469 346 Antisense
GATCCTTGCTGCATTGCCAGTTTAC 557 415 372 Antisense
CTTCCACCATTCATGTTTGCTTTGT 472 219 541 Antisense
CAATGGAATTCTTCCGACGCCTTTG 643 181 573 Antisense
AAAGTTTCTTCATCGCTTTTGCTTC 165 123 614 Antisense
TTTCCTTGCATCAATCGTCTTGGGT 459 669 660 Antisense
GTTTCTCTATTGTGATTTCGCTGTT 140 451 686 Antisense
TTCGCTGTTCAATATCGTTCACGTC 520 695 702 Antisense
Sequence Source Affymetrix Proprietary Database