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[178103_at]

Description R160.4 /REP_DB=WormBase Gene ID /WP=CE19554 /TR=Q9TZD4 /GB=AAC68735.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 34.5
(-2.7)
A 		31.8
(-3)
A 		57.7
(-0.3)
A 		88.8
(3)
A 		57
B 86.3
(3)
A 		75.9
(1.2)
A 		52.1
(-3)
A 		54.8
(-2.5)
A 		34
C 62.8
(-0.4)
A 		53.7
(-1.3)
A 		37
(-3)
A 		97.5
(3)
P 		61
avr 61.2
(-0.7) 		53.8
(-2.1) 		48.9
(-3) 		80.4
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 6.2
(-3)
A 		104
(3)
A 		65.7
(0.7)
A 		34.5
(-1.3)
A 		38
(-1)
A 		10.8
(-2.7)
A 		98
B 32
(-3)
A 		50.5
(-0.2)
A 		66.2
(2.1)
A 		72.2
(3)
A 		38.5
(-2)
A 		36.7
(-2.3)
A 		40
C 69.6
(3)
A 		48.1
(-0.4)
A 		68.4
(2.8)
A 		46.9
(-0.6)
A 		43.1
(-1.2)
A 		31.5
(-3)
M 		38
avr 35.9
(-1.6) 		67.5
(3) 		66.8
(2.9) 		51.2
(0.6) 		39.9
(-1) 		26.3
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 12.6
(1.2)
A 		6.9
(-3)
A 		15.1
(3)
A 		13
(1.5)
A 		8
B 27.5
(3)
A 		18.7
(-0.3)
A 		12.1
(-2.8)
A 		11.7
(-3)
A 		16
C 20.8
(3)
A 		15.4
(-1.1)
A 		12.9
(-3)
A 		16.4
(-0.3)
P 		8
avr 20.3
(3) 		13.7
(-2.7) 		13.4
(-3) 		13.7
(-2.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 1.1
(-3)
A 		37
(3)
A 		14.3
(-0.8)
A 		8.8
(-1.7)
A 		11.5
(-1.3)
A 		2.6
(-2.7)
A 		36
B 11.1
(-3)
A 		16.8
(1.3)
A 		16.1
(0.8)
A 		19.1
(3)
A 		15.6
(0.4)
A 		13.7
(-1.1)
A 		8
C 25.8
(3)
A 		14.7
(-1.1)
A 		17.4
(-0.1)
A 		9.4
(-3)
A 		14
(-1.3)
A 		10.5
(-2.6)
M 		16
avr 12.7
(-1.4) 		22.8
(3) 		15.9
(0) 		12.4
(-1.5) 		13.7
(-0.9) 		8.9
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178103_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16433
Sequence Type Exemplar sequence
Representative Public ID R160.4 NCBI
Target Description R160.4 /REP_DB=WormBase Gene ID /WP=CE19554 /TR=Q9TZD4 /GB=AAC68735.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076351(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076351 NCBI Caenorhabditis elegans R160.4 (R160.4) mRNA, complete cds. 11/11 None
R160.4 ENSEMBL cdna:known chromosome:CEL140:X:4367141:4368823:-1 gene:R160.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000044081 8/11 Cross Hyb Matching Probes None
SNAP00000044067 8/11 Cross Hyb Matching Probes None
SNAP00000044068 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4367141-4368824(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R160.4
Entrez Gene 187913 Entrez gene
SwissProt Q9TZD4 EMBL-EBI
WormBase CE19554 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68735 Hypothetical protein R160.4 [Caenorhabditis elegans] ref|NP_508752.1| R160.4 [Caenorhabditis elegans] 4.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508752.1 2 7-27,83-105
R160.4 2 7-27,83-105
Sequence
Target Sequence 
>C. ELEGANS:178103_AT
aaatgcatctatctcatcttgctcctaatttggtcaatatttttcatcatcctattcata
actctcatcagagaatggttcttcccacagccccgttttttcgaaagatttgaggatgaa
gaggagccaagtcgtccacaaggatttgtatctcttgacgtggagcaactggagcaaatg
catgggctggaagtatatgctgccaacaaaatggaaacagctcaaacaatcaaatatcat
gttccgccgatgctcatttttttggttgttgtcctctcgtgtctcagcattggttttttg
gtagactacatcatgcaaaagtacggttgctgtggacggagaggaagttgctgccggcca
gagctggaaggagatgaggacgctgagaacgctcaagggtctatacccctagcatcactt
ggaacaactaacgacccattaccaggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCATCTATCTCATCTTGCTCC 30 121 25 Antisense
TTGGTCAATATTTTTCATCATCCTA 399 709 54 Antisense
CATCATCCTATTCATAACTCTCATC 520 213 69 Antisense
ATCAAATATCATGTTCCGCCGATGC 422 27 253 Antisense
TCCGCCGATGCTCATTTTTTTGGTT 454 595 267 Antisense
TCTCGTGTCTCAGCATTGGTTTTTT 261 611 299 Antisense
GTACGGTTGCTGTGGACGGAGAGGA 664 455 345 Antisense
CGGAGAGGAAGTTGCTGCCGGCCAG 545 243 361 Antisense
GAGAACGCTCAAGGGTCTATACCCC 541 389 409 Antisense
CTATACCCCTAGCATCACTTGGAAC 29 225 425 Antisense
CAACTAACGACCCATTACCAGGAAG 289 137 449 Antisense
Sequence Source Affymetrix Proprietary Database