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[178102_at]

Description C40H5.6 /REP_DB=WormBase Gene ID /WP=CE08654 /TR=Q9U3M8 /GB=CAB03957.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 44      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 26.9
(3)
A 		6.3
(-2.8)
A 		5.7
(-3)
A 		8.7
(-2.2)
A 		21
B 1.7
(-2.8)
A 		11.4
(3)
A 		3.4
(-1.8)
A 		1.4
(-3)
A 		10
C 4.6
(-3)
A 		17
(3)
A 		13.2
(1.2)
A 		5.2
(-2.7)
A 		12
avr 11.1
(2.5) 		11.6
(3) 		7.4
(-0.9) 		5.1
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.7
(-3)
A 		1.7
(-3)
A 		12.3
(3)
A 		2.7
(-2.4)
A 		1.7
(-3)
A 		2.9
(-2.3)
A 		11
B 18.8
(3)
A 		1.6
(-3)
A 		2.7
(-2.6)
A 		5.7
(-1.6)
A 		14.9
(1.6)
A 		18.8
(3)
A 		17
C 4.8
(-1.8)
A 		6.9
(-0.9)
A 		2.2
(-2.8)
A 		4.1
(-2)
A 		1.6
(-3)
A 		17
(3)
A 		15
avr 8.4
(0.2) 		3.4
(-3) 		5.7
(-1.5) 		4.2
(-2.5) 		6.1
(-1.3) 		12.9
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.8
(3)
A 		1.4
(-2.9)
A 		1.5
(-2.9)
A 		1.3
(-3)
A 		9
B 0.5
(-2.5)
A 		2.8
(3)
A 		0.8
(-1.8)
A 		0.3
(-3)
A 		3
C 1.5
(-2.1)
A 		4.9
(3)
A 		4.6
(2.6)
A 		0.9
(-3)
A 		4
avr 3.9
(3) 		3
(1.3) 		2.3
(-0.1) 		0.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.6
(-2.3)
A 		2.7
(3)
A 		0.7
(-2)
A 		0.5
(-2.5)
A 		0.7
(-2)
A 		2
B 6.5
(2.5)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		1.5
(-2.1)
A 		6
(2.1)
A 		7
(3)
A 		7
C 1.8
(-1.5)
A 		2.1
(-1.2)
A 		0.5
(-3)
A 		0.8
(-2.7)
A 		0.5
(-3)
A 		5.7
(3)
A 		5
avr 2.9
(0.3) 		1.1
(-2.8) 		1.3
(-2.5) 		1
(-3) 		2.3
(-0.8) 		4.5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178102_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16141
Sequence Type Exemplar sequence
Representative Public ID C40H5.6 NCBI
Target Description C40H5.6 /REP_DB=WormBase Gene ID /WP=CE08654 /TR=Q9U3M8 /GB=CAB03957.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077570(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077570 NCBI Caenorhabditis elegans C40H5.6 (C40H5.6) mRNA, complete cds. 10/11 None
GENEFINDER00000010982 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11775431:11775998:1 10/11 None
SNAP00000010975 ENSEMBL cdna:SNAP chromosome:CEL140:X:11775458:11776495:1 11/11 None
C40H5.6 ENSEMBL cdna:known chromosome:CEL140:X:11775111:11776495:1 gene:C40H5.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11775110-11776495(+) 100.0 100.0
Public Domain and Genome References
Ensembl C40H5.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509971 C40H5.6 [Caenorhabditis elegans] 0.0
blast NP_509971 C40H5.6 [Caenorhabditis elegans] 1.0E-148
blast NP_509971 C40H5.6 [Caenorhabditis elegans] 9.0E-82
blast AAK82899 Hypothetical protein F59E12.5b [Caenorhabditis elegans] ref|NP_495093.1| F59E12.5b [Caenorhabditis elegans] 2.0E-51
blast AAB54255 Hypothetical protein F59E12.5a [Caenorhabditis elegans] ref|NP_495094.1| F59E12.5a [Caenorhabditis elegans] 2.0E-51
blast AAB52943 Hypothetical protein C18E3.2 [Caenorhabditis elegans] ref|NP_491329.2| C18E3.2 [Caenorhabditis elegans] 6.0E-47
blast CAE66812 Hypothetical protein CBG12176 [Caenorhabditis briggsae] 1.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR007717 EMBL-EBI NPL4 1.6E-18
Pfam IPR007717 EMBL-EBI NPL4 1.6E-52
Pfam IPR007717 EMBL-EBI NPL4 7.2E-38
Pfam IPR007717 EMBL-EBI NPL4 1.3E-31
Sequence
Target Sequence 
>C. ELEGANS:178102_AT
actacatggcaatcctggccgaagctttgaaacgcccgagtaaagccaagaagcgtcttc
gaatttacatttcacacacttttatcgaagagaggcaaccggagcaggataccgatgaag
cttctcttccgatgtgggaacttcgtgtcgaaggacgacttctcgatgagcagcctgcgg
ctcctgctattccagatgattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACATGGCAATCCTGGCCGAAGC 358 99 569 Antisense
GCAATCCTGGCCGAAGCTTTGAAAC 213 323 577 Antisense
GGCCGAAGCTTTGAAACGCCCGAGT 694 539 585 Antisense
GTAAAGCCAAGAAGCGTCTTCGAAT 654 459 608 Antisense
GCGTCTTCGAATTTACATTTCACAC 481 291 621 Antisense
TTCGAATTTACATTTCACACACTTT 40 697 626 Antisense
AGAGAGGCAACCGGAGCAGGATACC 325 67 657 Antisense
GCAGGATACCGATGAAGCTTCTCTT 466 311 672 Antisense
ACCGATGAAGCTTCTCTTCCGATGT 408 89 679 Antisense
GTGTCGAAGGACGACTTCTCGATGA 491 483 713 Antisense
GGCTCCTGCTATTCCAGATGATTTA 301 539 747 Antisense
Sequence Source Affymetrix Proprietary Database