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[178101_at]

Description F59F5.1 /REP_DB=WormBase Gene ID /WP=CE03442 /TR=Q21044 /GB=CAA90655.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 45      6grp_total > 12      4grp_total > 50      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 54
(0.6)
P 		59.2
(3)
P 		55.9
(1.5)
P 		46.1
(-3)
A 		13
B 51.2
(-1.7)
P 		70.1
(1.6)
P 		78.1
(3)
P 		44.1
(-3)
P 		34
C 54.1
(-1.3)
P 		67.3
(3)
P 		48.7
(-3)
P 		61.9
(1.3)
P 		19
avr 53.1
(-2) 		65.5
(3) 		60.9
(1.1) 		50.7
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 58.5
(1.7)
P 		70.7
(3)
M 		55.6
(1.4)
P 		35.9
(-0.7)
A 		34.5
(-0.8)
A 		13.6
(-3)
A 		57
B 77.7
(1.9)
P 		87.6
(3)
P 		50.3
(-1.1)
P 		47.5
(-1.4)
A 		32.9
(-3)
P 		46.3
(-1.5)
M 		55
C 14.9
(-3)
A 		40.4
(2.1)
P 		39.6
(1.9)
A 		45
(3)
A 		29.8
(-0)
A 		29.3
(-0.1)
A 		30
avr 50.4
(0.4) 		66.2
(3) 		48.5
(0.1) 		42.8
(-0.8) 		32.4
(-2.6) 		29.7
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 19.7
(3)
P 		12.9
(-0.1)
P 		14.6
(0.6)
P 		6.7
(-3)
A 		13
B 16.3
(1.8)
P 		17.3
(2.4)
P 		18.1
(3)
P 		9.4
(-3)
P 		9
C 17.9
(2.1)
P 		19.3
(3)
P 		17
(1.4)
P 		10.4
(-3)
P 		9
avr 18
(3) 		16.5
(2) 		16.6
(2.1) 		8.8
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 10.8
(-0.9)
P 		25.1
(3)
M 		12.1
(-0.6)
P 		9.1
(-1.4)
A 		10.4
(-1)
A 		3.3
(-3)
A 		22
B 27
(2.3)
P 		29.1
(3)
P 		12.2
(-3)
P 		12.6
(-2.9)
A 		13.3
(-2.6)
P 		17.2
(-1.2)
M 		17
C 5.5
(-3)
A 		12.3
(3)
P 		10.1
(1.1)
A 		9
(0.1)
A 		9.7
(0.7)
A 		9.8
(0.8)
A 		7
avr 14.4
(-0.9) 		22.2
(3) 		11.5
(-2.3) 		10.2
(-3) 		11.1
(-2.5) 		10.1
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178101_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16418
Sequence Type Exemplar sequence
Representative Public ID F59F5.1 NCBI
Target Description F59F5.1 /REP_DB=WormBase Gene ID /WP=CE03442 /TR=Q21044 /GB=CAA90655.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077361(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077361 NCBI Caenorhabditis elegans F59F5.1 (F59F5.1) mRNA, complete cds. 11/11 None
SNAP00000005590 ENSEMBL cdna:SNAP chromosome:CEL140:X:10530417:10532179:1 10/11 None
GENEFINDER00000005599 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10530417:10532179:1 10/11 None
F59F5.1 ENSEMBL cdna:known chromosome:CEL140:X:10530363:10532179:1 gene:F59F5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10530362-10532179(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59F5.1
Entrez Gene 186633 Entrez gene
SwissProt Q21044 EMBL-EBI
WormBase CE03442 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90655 Hypothetical protein F59F5.1 [Caenorhabditis elegans] ref|NP_509762.1| F59F5.1 [Caenorhabditis elegans] 0.0
blast CAE60796 Hypothetical protein CBG04487 [Caenorhabditis briggsae] 0.0
blast NP_001026393 solute carrier family 16 (monocarboxylic acid transporters), member 9 [Gallus gallus] emb|CAG32003.1| hypothetical protein [Gallus gallus] 3.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509762.1 11 23-45,52-70,74-96,109-126,141-160,188-210,220-242,249-268,278-300,307-329,364-386
F59F5.1 11 23-45,52-70,74-96,109-126,141-160,188-210,220-242,249-268,278-300,307-329,364-386
SNAP00000005590 11 20-42,49-67,71-93,106-123,138-157,185-207,217-239,246-265,275-297,304-326,341-363
GENEFINDER00000005599 11 20-42,49-67,71-93,106-123,138-157,185-207,217-239,246-265,275-297,304-326,341-363
Sequence
Target Sequence 
>C. ELEGANS:178101_AT
agctcagttatcactttctgctgcagctttctgctacaaattctggcaatttagacttca
aaatgcttttgctggcattggaattggactctaccaagcttgtttagcaccgtttttggt
ggctctcgttggaccttctcaacttgcatatgcacttggctttaccaatttgatcaacgg
agtatctattatttccggcgtgtggatttcaggtttgccgccatcaattttattatccaa
gttttcaaatctaatcggtcacaatttttcaggatttgcaagcaaaggaacaactggtga
ccacgcaagaagtgcatttttcgtttctatttggcttgggcttgcagcgatagtcatgtc
aattgccacgtcatctgttcttatggctag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCAGTTATCACTTTCTGCTGCA 654 79 783 Antisense
TTCTGCTGCAGCTTTCTGCTACAAA 53 695 798 Antisense
GCTGGCATTGGAATTGGACTCTACC 524 293 853 Antisense
GACTCTACCAAGCTTGTTTAGCACC 446 371 869 Antisense
TCTCGTTGGACCTTCTCAACTTGCA 410 611 906 Antisense
CTTGCATATGCACTTGGCTTTACCA 158 219 925 Antisense
TCAGGTTTGCCGCCATCAATTTTAT 31 623 991 Antisense
GTGCATTTTTCGTTTCTATTTGGCT 295 481 1094 Antisense
TTGGCTTGGGCTTGCAGCGATAGTC 318 709 1113 Antisense
GCGATAGTCATGTCAATTGCCACGT 592 287 1129 Antisense
CCACGTCATCTGTTCTTATGGCTAG 318 273 1148 Antisense
Sequence Source Affymetrix Proprietary Database