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[178100_at]

Description K08H2.4 /REP_DB=WormBase Gene ID /WP=CE06162 /TR=Q21369 /GB=CAA94151.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 31.7
(-2.3)
A 		18.7
(-3)
A 		17.9
(-3)
A 		142.2
(3)
A 		124
B 49.5
(3)
A 		7.4
(-3)
A 		7.1
(-3)
A 		27.4
(-0.1)
A 		42
C 28.2
(-1.2)
A 		56.3
(1.4)
A 		7.8
(-3)
A 		74.5
(3)
A 		67
avr 36.5
(-0.8) 		27.5
(-1.6) 		10.9
(-3) 		81.4
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 19.9
(-1.7)
A 		7.5
(-3)
A 		63.8
(3)
A 		29.6
(-0.6)
A 		26
(-1)
A 		49.4
(1.5)
A 		56
B 112.5
(3)
A 		43.6
(-0.8)
A 		4.9
(-3)
A 		49.6
(-0.5)
A 		69.5
(0.6)
A 		61.6
(0.2)
A 		108
C 63.2
(2.5)
A 		18.7
(-3)
A 		41.1
(-0.3)
A 		67.6
(3)
A 		66.9
(2.9)
A 		67.6
(3)
A 		49
avr 65.2
(3) 		23.3
(-3) 		36.6
(-1.1) 		48.9
(0.7) 		54.1
(1.4) 		59.5
(2.2) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 11.6
(-0.3)
A 		4.1
(-3)
A 		4.7
(-2.8)
A 		20.8
(3)
A 		17
B 15.8
(3)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		5.8
(-1.2)
A 		14
C 9.3
(-0.1)
A 		16.2
(3)
A 		2.7
(-3)
A 		12.6
(1.4)
A 		14
avr 12.2
(2.5) 		7.4
(-0.4) 		3
(-3) 		13.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 3.7
(-2.5)
A 		2.7
(-3)
A 		13.9
(3)
A 		7.5
(-0.4)
A 		7.8
(-0.3)
A 		12
(2)
A 		11
B 39.1
(3)
A 		14.5
(-0.9)
A 		1.2
(-3)
A 		13.1
(-1.1)
A 		28.3
(1.3)
A 		23
(0.5)
A 		38
C 23.4
(3)
A 		5.7
(-3)
A 		10.5
(-1.4)
A 		13.6
(-0.3)
A 		21.6
(2.4)
A 		22.6
(2.7)
A 		18
avr 22.1
(3) 		7.6
(-3) 		8.5
(-2.6) 		11.4
(-1.4) 		19.2
(1.8) 		19.2
(1.8) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178100_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17794
Sequence Type Exemplar sequence
Representative Public ID K08H2.4 NCBI
Target Description K08H2.4 /REP_DB=WormBase Gene ID /WP=CE06162 /TR=Q21369 /GB=CAA94151.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077796(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077796 NCBI Caenorhabditis elegans K08H2.4 (K08H2.4) mRNA, complete cds. 11/11 None
SNAP00000000972 ENSEMBL cdna:SNAP chromosome:CEL140:X:13238442:13239868:1 11/11 None
K08H2.4 ENSEMBL cdna:known chromosome:CEL140:X:13238571:13240065:1 gene:K08H2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000984 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13238570-13239868(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08H2.4
Entrez Gene 181449 Entrez gene
SwissProt Q21369 EMBL-EBI
WormBase CE06162 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94151 Hypothetical protein K08H2.4 [Caenorhabditis elegans] ref|NP_510197.1| K08H2.4 [Caenorhabditis elegans] 1.0E-80
blast CAA94151 Hypothetical protein K08H2.4 [Caenorhabditis elegans] ref|NP_510197.1| K08H2.4 [Caenorhabditis elegans] 3.0E-80
blast CAA94150 Hypothetical protein K08H2.3 [Caenorhabditis elegans] ref|NP_510196.1| K08H2.3 [Caenorhabditis elegans] 1.0E-16
blast CAA94150 Hypothetical protein K08H2.3 [Caenorhabditis elegans] ref|NP_510196.1| K08H2.3 [Caenorhabditis elegans] 3.0E-16
blast CAA94148 Hypothetical protein K08H2.2 [Caenorhabditis elegans] ref|NP_510195.1| K08H2.2 [Caenorhabditis elegans] 2.0E-15
blast CAA94148 Hypothetical protein K08H2.2 [Caenorhabditis elegans] ref|NP_510195.1| K08H2.2 [Caenorhabditis elegans] 6.0E-15
Sequence
Target Sequence 
>C. ELEGANS:178100_AT
tgcaaacagcccttgtcggctatcaacacgaacaatgccacgatatacctcagaaagctg
ctcgaatgtcaaagtgcccacaagtttcatcactggatctagaactgaccacgaagaagg
ttgaaaaatgcccgaccaacaactccgattctttcgagcagacagacgagccgccggtgc
aaatgagtgcaaagctgcgtgctcttgttgaaaaaatgtactccactcaagaagaacaca
cggatgtcttcccagcgtcacccaaaaaaggagagatcgttatcccaacgggagggcttg
ccaaatgcgtctgttcgccaaactgcaaaaaggagctcccacaaccggcgtatctcatta
tta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAAACAGCCCTTGTCGGCTATCA 271 577 14 Antisense
GAACAATGCCACGATATACCTCAGA 257 353 43 Antisense
GCTGCTCGAATGTCAAAGTGCCCAC 385 297 70 Antisense
GCCCACAAGTTTCATCACTGGATCT 279 287 89 Antisense
CCGACCAACAACTCCGATTCTTTCG 105 249 145 Antisense
TTTCGAGCAGACAGACGAGCCGCCG 329 669 165 Antisense
GACGAGCCGCCGGTGCAAATGAGTG 209 379 178 Antisense
GTGCAAAGCTGCGTGCTCTTGTTGA 248 481 200 Antisense
GTTATCCCAACGGGAGGGCTTGCCA 269 447 292 Antisense
AAATGCGTCTGTTCGCCAAACTGCA 472 119 316 Antisense
CCACAACCGGCGTATCTCATTATTA 7 277 352 Antisense
Sequence Source Affymetrix Proprietary Database