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[178099_at]

Description F56H6.4 /REP_DB=WormBase Gene ID /WP=CE25914 /TR=O45581 /GB=CAB04492.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 4.5
(-3)
A 		6.7
(3)
A 		5
(-1.6)
A 		5.2
(-1.1)
A 		2
B 4
(0.9)
A 		4.8
(3)
A 		2.5
(-3)
A 		4.3
(1.7)
A 		2
C 4.7
(-0.1)
A 		5.1
(0.9)
A 		3.6
(-3)
A 		5.9
(3)
A 		2
avr 4.4
(-0.7) 		5.5
(3) 		3.7
(-3) 		5.1
(1.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 5.3
(-0.8)
A 		2.7
(-3)
A 		3.3
(-2.5)
A 		4.3
(-1.6)
A 		9.8
(3)
A 		6.3
(0)
A 		7
B 3.2
(0.6)
A 		2.6
(-1.2)
A 		4
(3)
A 		3.9
(2.7)
A 		3.4
(1.2)
A 		2
(-3)
A 		2
C 2.4
(-3)
A 		2.7
(-2.6)
A 		3.5
(-1.4)
A 		6.4
(3)
A 		6.3
(2.9)
A 		3.2
(-1.8)
A 		4
avr 3.6
(-1.6) 		2.7
(-3) 		3.6
(-1.6) 		4.9
(0.5) 		6.5
(3) 		3.8
(-1.3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.6
(3)
A 		1.5
(2.3)
A 		1.3
(0.8)
A 		0.8
(-3)
A 		1
B 1.3
(3)
A 		1.2
(2.1)
A 		0.6
(-3)
A 		0.9
(-0.4)
A 		1
C 1.6
(3)
A 		1.5
(2)
A 		1.3
(0)
A 		1
(-3)
A 		1
avr 1.5
(3) 		1.4
(2) 		1.1
(-1) 		0.9
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1
(-2.2)
A 		1
(-2.2)
A 		0.7
(-3)
A 		1.1
(-2)
A 		3
(3)
A 		1.5
(-0.9)
A 		2
B 1.1
(0.4)
A 		0.9
(-1.3)
A 		1
(-0.4)
A 		1
(-0.4)
A 		1.4
(3)
A 		0.7
(-3)
A 		1
C 0.9
(-2.5)
A 		0.8
(-3)
A 		0.9
(-2.5)
A 		1.3
(-0.5)
A 		2
(3)
A 		1.1
(-1.5)
A 		1
avr 1
(-2.5) 		0.9
(-3) 		0.9
(-3) 		1.1
(-2) 		2.1
(3) 		1.1
(-2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178099_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1571
Sequence Type Exemplar sequence
Representative Public ID F56H6.4 NCBI
Target Description F56H6.4 /REP_DB=WormBase Gene ID /WP=CE25914 /TR=O45581 /GB=CAB04492.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060704(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060704 NCBI Caenorhabditis elegans F56H6.4 (F56H6.4) mRNA, complete cds. 11/11 None
GENEFINDER00000044671 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12289343:12300334:1 11/11 None
F56H6.4 ENSEMBL cdna:known chromosome:CEL140:I:12298571:12300334:1 gene:F56H6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044653 1/11 Cross Hyb Matching Probes None
SNAP00000044654 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12298501-12300265(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56H6.4
Entrez Gene 186415 Entrez gene
SwissProt O45581 EMBL-EBI
WormBase CE25914 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04491 Hypothetical protein F56H6.2 [Caenorhabditis elegans] ref|NP_493103.1| F56H6.2 [Caenorhabditis elegans] 0.0
blast CAB04490 Hypothetical protein F56H6.1 [Caenorhabditis elegans] ref|NP_493101.1| F56H6.1 [Caenorhabditis elegans] 0.0
blast CAB04492 Hypothetical protein F56H6.4 [Caenorhabditis elegans] ref|NP_493105.1| F56H6.4 [Caenorhabditis elegans] 1.0E-177
blast CAB04492 Hypothetical protein F56H6.4 [Caenorhabditis elegans] ref|NP_493105.1| F56H6.4 [Caenorhabditis elegans] 1.0E-176
blast AAB96709 Hypothetical protein F49D11.3 [Caenorhabditis elegans] ref|NP_492846.1| F49D11.3 [Caenorhabditis elegans] 1.0E-93
blast CAB03530 Hypothetical protein T09E11.3 [Caenorhabditis elegans] ref|NP_493131.1| T09E11.3 [Caenorhabditis elegans] 5.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 9.0E-124
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000044671 1 12-29
Sequence
Target Sequence 
>C. ELEGANS:178099_AT
aaaatgcgaacatgaccgctcctacctcaatccctctgaaacccttctgaacgataccga
cacggtgagatttgcattcattcgggacccattccaacgattcatctccttctacctgga
taaatgtgtgcgagaacaaaaatgttacaactgcggaaacaatatgacttgtgtgcttaa
aaatttctactggggcttgaagaaggttcagcggcgatgggatggaagagagcaaccgga
gtatgtggagattcatgcggcaccgctttcatggaattgtgacttctacaaggacctctc
aaaatggcaactgatacctattggatctgataaaaccgaaagaagctccgcgatcactca
aacggaaaagattttaagaaaacagcgagtcaatgagaccctggtggatatggttgtgga
tgggatgaaggacggtgacaccgatcattccacctacaagtctgcgcatcgccttgaagc
tgaacggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGCGAACATGACCGCTCCTAC 385 133 342 Antisense
CCCTTCTGAACGATACCGACACGGT 552 251 383 Antisense
CATTCATTCGGGACCCATTCCAACG 138 217 416 Antisense
GAAGGTTCAGCGGCGATGGGATGGA 493 333 543 Antisense
ATGTGGAGATTCATGCGGCACCGCT 161 51 584 Antisense
GGCACCGCTTTCATGGAATTGTGAC 672 535 600 Antisense
TGTGACTTCTACAAGGACCTCTCAA 505 553 619 Antisense
AACCGAAAGAAGCTCCGCGATCACT 136 147 675 Antisense
ACAGCGAGTCAATGAGACCCTGGTG 381 107 723 Antisense
AGGACGGTGACACCGATCATTCCAC 480 55 770 Antisense
GCGCATCGCCTTGAAGCTGAACGGC 95 281 805 Antisense
Sequence Source Affymetrix Proprietary Database