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[178098_at]

Description C05G5.2 /REP_DB=WormBase Gene ID /WP=CE05225 /TR=Q17676 /GB=CAA94105.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 0      4grp_highest_8_8 > 35      4grp_high_8_8 > 48      6grp_highest_nonorm > 71      6grp_total > 14      4grp_total > 63      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 394.7
(3)
P 		104.3
(-3)
P 		311.2
(1.3)
P 		203
(-1)
P 		290
B 257.3
(3)
P 		252.2
(2.6)
P 		181.5
(-3)
P 		193.4
(-2.1)
P 		76
C 347.4
(3)
P 		262.1
(-0.3)
P 		319.1
(1.9)
P 		194.3
(-3)
P 		153
avr 333.1
(3) 		206.2
(-2.6) 		270.6
(0.2) 		196.9
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 331.2
(1)
P 		333.9
(1.1)
P 		277.2
(-1.4)
P 		321.1
(0.5)
P 		240.2
(-3)
P 		377.8
(3)
P 		138
B 326
(0.6)
P 		277.2
(-1.1)
P 		308
(-0.1)
P 		395.8
(3)
P 		267.2
(-1.5)
P 		223.1
(-3)
P 		173
C 330.1
(2.9)
P 		331.1
(3)
P 		315.6
(1.9)
P 		247.9
(-3)
P 		289.2
(-0)
P 		266.4
(-1.7)
P 		83
avr 329.1
(3) 		314.1
(1.6) 		300.3
(0.3) 		321.6
(2.3) 		265.5
(-3) 		289.1
(-0.8) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 143.7
(3)
P 		22.6
(-3)
P 		81.3
(-0.1)
P 		29.7
(-2.6)
P 		121
B 82.1
(3)
P 		62.3
(0.1)
P 		42.1
(-2.9)
P 		41.2
(-3)
P 		41
C 115
(3)
P 		75.3
(0.1)
P 		111.2
(2.7)
P 		32.8
(-3)
P 		82
avr 113.6
(3) 		53.4
(-1.6) 		78.2
(0.3) 		34.6
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 61.1
(-2.9)
P 		118.8
(3)
P 		60.4
(-3)
P 		81.4
(-0.8)
P 		72.5
(-1.8)
P 		92
(0.2)
P 		58
B 113.4
(3)
P 		92.3
(-0.3)
P 		74.8
(-3)
P 		104.8
(1.7)
P 		108.6
(2.3)
P 		83.2
(-1.7)
P 		39
C 122.4
(3)
P 		101
(1.2)
P 		80.3
(-0.5)
P 		49.9
(-3)
P 		93.6
(0.6)
P 		89.2
(0.3)
P 		73
avr 99
(2.1) 		104
(3) 		71.8
(-3) 		78.7
(-1.7) 		91.6
(0.7) 		88.1
(0) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178098_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17499
Sequence Type Exemplar sequence
Representative Public ID C05G5.2 NCBI
Target Description C05G5.2 /REP_DB=WormBase Gene ID /WP=CE05225 /TR=Q17676 /GB=CAA94105.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078047(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078047 NCBI Caenorhabditis elegans C05G5.2 (C05G5.2) mRNA, complete cds. 11/11 None
SNAP00000001547 ENSEMBL cdna:SNAP chromosome:CEL140:X:14747258:14750266:1 11/11 None
GENEFINDER00000001554 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14747258:14750270:1 10/11 None
C05G5.2 ENSEMBL cdna:known chromosome:CEL140:X:14747238:14750308:1 gene:C05G5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14747257-14750266(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05G5.2
Entrez Gene 181568 Entrez gene
SwissProt Q17676 EMBL-EBI
WormBase CE05225 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94105 Hypothetical protein C05G5.2 [Caenorhabditis elegans] ref|NP_510448.1| C05G5.2 [Caenorhabditis elegans] 0.0
blast CAE63223 Hypothetical protein CBG07583 [Caenorhabditis briggsae] 2.0E-35
blast CAE63223 Hypothetical protein CBG07583 [Caenorhabditis briggsae] 1.0E-32
Sequence
Target Sequence 
>C. ELEGANS:178098_AT
tttgttctcatcagattcggactctgatgacgactttttaaagtcgttctcaaaatcaaa
gcctgttgctaaaacggaatccattcccgttgtgaagaagcctattgagccagttgttgt
tccaaaagctgttgatattccagcgccaaaaccaacacctgtcaccaacactaccgcagt
aatccccaaagtagaattcaaaaaaccagccgccaagtcactctttgatgatagtgactc
tgactcagacttgttctctctacccacaaaaccgaaaacaccaatcgctcccaaaaacag
aaactcgtcaattgtcactcaacctgaaatggaaccctcatcatctgaaccagcaaaacc
agcaaaaccatcaattaccaaaaaagagccaccaagcgaaacaatgtctgcaaaaatatc
actaataggagacttacaaaaatcattccgtctcccgggttctacacctaacattcctgt
caaaaacttaccggttagcgatgaaaatgatgtcgctgctgagaatccagaagatcacgt
cggtagtattttgaagagtcgctgccgaggtcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGTTCTCATCAGATTCGGACTCT 412 661 1449 Antisense
GAATCCATTCCCGTTGTGAAGAAGC 179 331 1525 Antisense
GAAGCCTATTGAGCCAGTTGTTGTT 598 343 1545 Antisense
TGTTGATATTCCAGCGCCAAAACCA 183 561 1578 Antisense
TCAAAAAACCAGCCGCCAAGTCACT 690 627 1646 Antisense
GACTCTGACTCAGACTTGTTCTCTC 41 375 1684 Antisense
GAAACTCGTCAATTGTCACTCAACC 218 357 1748 Antisense
AATGGAACCCTCATCATCTGAACCA 681 161 1776 Antisense
CTTACAAAAATCATTCCGTCTCCCG 675 217 1881 Antisense
GTTCTACACCTAACATTCCTGTCAA 641 443 1907 Antisense
TTTGAAGAGTCGCTGCCGAGGTCCT 344 667 1998 Antisense
Sequence Source Affymetrix Proprietary Database