[Home] | [Total List]

[178097_at]

Description F35C5.4 /REP_DB=WormBase Gene ID /WP=CE15944 /TR=O45439 /GB=CAB03053.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 7.2
(-3)
A 		57.7
(3)
A 		10.1
(-2.7)
A 		7.6
(-3)
A 		51
B 7.8
(-1.1)
A 		17.4
(3)
A 		8.5
(-0.8)
A 		3.5
(-3)
A 		14
C 10.9
(-0.4)
A 		12.8
(3)
A 		10.4
(-1.2)
A 		9.4
(-3)
A 		3
avr 8.6
(-2.5) 		29.3
(3) 		9.7
(-2.2) 		6.8
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 11.9
(-1.6)
A 		6.4
(-2.8)
A 		34.7
(3)
A 		14.8
(-1)
A 		5.2
(-3)
A 		20.5
(0.1)
A 		30
B 7.6
(-3)
A 		7.9
(-3)
A 		11
(-2.5)
A 		45.9
(3)
A 		22
(-0.7)
A 		8.6
(-2.8)
A 		38
C 3.6
(-3)
A 		42.3
(3)
A 		10.1
(-2)
A 		9.7
(-2.1)
A 		6.5
(-2.6)
A 		8.1
(-2.3)
A 		39
avr 7.7
(-3) 		18.9
(1.3) 		18.6
(1.1) 		23.5
(3) 		11.2
(-1.7) 		12.4
(-1.2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.6
(-2.2)
A 		12.5
(3)
A 		2.6
(-2.2)
A 		1.1
(-3)
A 		11
B 2.5
(0)
A 		4.3
(3)
A 		2
(-0.8)
A 		0.7
(-3)
A 		4
C 3.6
(2.7)
A 		3.7
(3)
A 		3.6
(2.7)
A 		1.6
(-3)
A 		2
avr 2.9
(-1.1) 		6.8
(3) 		2.7
(-1.3) 		1.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.2
(-2.4)
A 		2.3
(-2.3)
A 		7.6
(3)
A 		3.8
(-0.8)
A 		1.6
(-3)
A 		5
(0.4)
A 		6
B 2.6
(-3)
A 		2.6
(-3)
A 		2.7
(-2.9)
A 		12.1
(3)
A 		9
(1)
A 		3.2
(-2.6)
A 		10
C 1.3
(-3)
A 		12.9
(3)
A 		2.6
(-2.3)
A 		1.9
(-2.7)
A 		2.1
(-2.6)
A 		2.7
(-2.3)
A 		12
avr 2
(-3) 		5.9
(3) 		4.3
(0.5) 		5.9
(3) 		4.2
(0.4) 		3.6
(-0.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3975
Sequence Type Exemplar sequence
Representative Public ID F35C5.4 NCBI
Target Description F35C5.4 /REP_DB=WormBase Gene ID /WP=CE15944 /TR=O45439 /GB=CAB03053.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064339(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064339 NCBI Caenorhabditis elegans F35C5.4 (F35C5.4) mRNA, complete cds. 11/11 None
GENEFINDER00000007554 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12888639:12891849:1 10/11 None
F35C5.4 ENSEMBL cdna:known chromosome:CEL140:II:12890527:12891921:1 gene:F35C5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007544 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12890523-12891918(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35C5.4
Entrez Gene 185263 Entrez gene
SwissProt O45439 EMBL-EBI
WormBase CE15944 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03052 Hypothetical protein F35C5.3 [Caenorhabditis elegans] ref|NP_496739.1| F35C5.3 [Caenorhabditis elegans] 1.0E-162
blast CAB03053 Hypothetical protein F35C5.4 [Caenorhabditis elegans] ref|NP_496740.1| F35C5.4 [Caenorhabditis elegans] 2.0E-41
blast AAS65018 CG33265-PA [Drosophila melanogaster] ref|NP_996064.1| CG33265-PA [Drosophila melanogaster] 2.0E-20
blast EAL87607 antigenic cell wall galactomannoprotein, putative [Aspergillus fumigatus Af293] ref|XP_749645.1| antigenic cell wall galactomannoprotein [Aspergillus fumigatus Af293] 1.0E-19
Sequence
Target Sequence 
>C. ELEGANS:178097_AT
ggaaccttcaacctcttcaagttcaagtccttctagctcccgtcctgaggatggagcaac
agttggcaacacattcactcaaagttcagctgtatcagaatcccaaagcacctctgaacg
cacatctagatcagtgtctcctgattctacaccagtcagagtaactacatcgacacttct
ttcaacagtgccaacatctcaagacatatcgggtgtgagcacggctcctactacaaaagc
cacattgccgcccataacctatccgcctgctccaactactaccaccatcaatttggctcc
tatcacctacccacctattctcactactacgattagcctggagccaattttcgaacaagt
accagtcaacttgccaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACCTTCAACCTCTTCAAGTTCA 493 529 51 Antisense
TTCAAGTTCAAGTCCTTCTAGCTCC 470 685 66 Antisense
TCTAGCTCCCGTCCTGAGGATGGAG 645 613 82 Antisense
CGCACATCTAGATCAGTGTCTCCTG 437 253 169 Antisense
GTCTCCTGATTCTACACCAGTCAGA 41 471 186 Antisense
GTAACTACATCGACACTTCTTTCAA 96 463 211 Antisense
TATCGGGTGTGAGCACGGCTCCTAC 125 657 257 Antisense
ACTACCACCATCAATTTGGCTCCTA 422 101 328 Antisense
TTCTCACTACTACGATTAGCCTGGA 124 691 368 Antisense
AGCCTGGAGCCAATTTTCGAACAAG 703 83 385 Antisense
CAAGTACCAGTCAACTTGCCACCGA 235 183 406 Antisense
Sequence Source Affymetrix Proprietary Database