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[178095_at]

Description ZC168.3 /REP_DB=WormBase Gene ID /WP=CE06569 /TR=Q23249 /GB=CAA94386.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 19      4grp_high_8_8 > 39      6grp_highest_nonorm > 94      6grp_total > 96      4grp_total > 40      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 112.1
(-3)
P 		161.9
(0.3)
P 		169
(0.8)
P 		202.3
(3)
P 		90
B 158.4
(-3)
P 		164.5
(-2.4)
P 		218.6
(3)
P 		186.7
(-0.2)
P 		60
C 141.8
(-2.9)
P 		189.8
(-1.5)
P 		339.5
(3)
P 		139.5
(-3)
P 		200
avr 137.4
(-3) 		172.1
(-1) 		242.4
(3) 		176.2
(-0.8) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1065
1 2 3 4 5 6 range
A 119.4
(-3)
P 		172.8
(-2.6)
P 		240.6
(-2.1)
P 		326.2
(-1.5)
P 		943.3
(2.8)
P 		974.9
(3)
P 		856
B 143.7
(-2.7)
P 		97.1
(-3)
P 		209
(-2.2)
P 		464.9
(-0.3)
P 		725.4
(1.5)
P 		928.8
(3)
P 		832
C 114.8
(-3)
P 		139.7
(-2.9)
P 		260.7
(-2.2)
P 		469.7
(-1)
P 		710.2
(0.4)
P 		1161.8
(3)
P 		1047
avr 126
(-3) 		136.5
(-2.9) 		236.8
(-2.3) 		420.3
(-1) 		793
(1.5) 		1021.8
(3) 		896
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 40.8
(1.6)
P 		35.1
(-0.7)
P 		44.2
(3)
P 		29.6
(-3)
P 		15
B 50.5
(2.9)
P 		40.6
(-2.6)
P 		50.7
(3)
P 		39.8
(-3)
P 		11
C 46.9
(-1.5)
P 		54.6
(-1)
P 		118.3
(3)
P 		23.5
(-3)
P 		95
avr 46.1
(-0.7) 		43.4
(-1.1) 		71.1
(3) 		31
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 367
1 2 3 4 5 6 range
A 22
(-3)
P 		61.5
(-2.1)
P 		52.4
(-2.3)
P 		82.7
(-1.6)
P 		284.6
(3)
P 		237.4
(1.9)
P 		263
B 50
(-2.7)
P 		32.3
(-3)
P 		50.7
(-2.6)
P 		123.1
(-1.3)
P 		294.7
(2)
P 		346.3
(3)
P 		314
C 42.5
(-3)
P 		42.6
(-3)
P 		66.3
(-2.6)
P 		94.5
(-2.1)
P 		229.8
(0.2)
P 		388.9
(3)
P 		346
avr 38.2
(-3) 		45.5
(-2.8) 		56.5
(-2.6) 		100.1
(-1.7) 		269.7
(1.9) 		324.2
(3) 		286
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9672
Sequence Type Exemplar sequence
Representative Public ID ZC168.3 NCBI
Target Description ZC168.3 /REP_DB=WormBase Gene ID /WP=CE06569 /TR=Q23249 /GB=CAA94386.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069585(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069585 NCBI Caenorhabditis elegans ZC168.3 (ZC168.3) mRNA, complete cds. 9/11 A 
SNAP00000040684 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10733063:10734520:-1 9/11 None
GENEFINDER00000040693 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10732875:10734550:-1 9/11 None
ZC168.3 ENSEMBL cdna:known chromosome:CEL140:IV:10732875:10734550:-1 gene:ZC168.3 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10732880-10734556(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC168.3
Entrez Gene 177964 Entrez gene
SwissProt Q23249 EMBL-EBI
WormBase CE35700 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94386 Hypothetical protein ZC168.3 [Caenorhabditis elegans] ref|NP_501986.2| ZC168.3 [Caenorhabditis elegans] 0.0
blast CAE70858 Hypothetical protein CBG17646 [Caenorhabditis briggsae] 1.0E-148
blast CAE70858 Hypothetical protein CBG17646 [Caenorhabditis briggsae] 1.0E-145
blast AAH65383 Origin recognition complex subunit 5 [Danio rerio] ref|NP_998363.1| origin recognition complex subunit 5 [Danio rerio] 4.0E-11
Sequence
Target Sequence 
>C. ELEGANS:178095_AT
gaaccggcgataaattcgactctacactggcaaaagaatgcctcaatagatcatctggag
aaaagctcgggaatgttgtcggagagaatctggccaaggagaacgagaacagttttgatg
ccatgccgctcgccatgaggtatctaaaaatactcaacagaaaatatgtagttcttccag
aaattccagtaaatttttatttcagatatcttctcatagccgcatactgtgccagcaata
atcctcatcaatcagactgccgatttttcgtaaagaaccacggccgagaaaagagatcag
aaaagaaagagctgcgtttagaagaaaatcgacttgccaaagatctcggtccaaaagctg
cagatcttcaaagaataatttgtatttacgaaacgcttctcaaaatcaatgaatcgacta
ttacaggatttgatctcaaaagtgttatcgcatctctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCGGCGATAAATTCGACTCTAC 87 347 668 Antisense
AAATTCGACTCTACACTGGCAAAAG 358 115 679 Antisense
AGAATGCCTCAATAGATCATCTGGA 498 75 702 Antisense
ATGTTGTCGGAGAGAATCTGGCCAA 648 45 740 Antisense
GAGAACAGTTTTGATGCCATGCCGC 274 393 772 Antisense
TGCCGCTCGCCATGAGGTATCTAAA 690 583 791 Antisense
ATTTCAGATATCTTCTCATAGCCGC 692 15 866 Antisense
TCTCATAGCCGCATACTGTGCCAGC 25 613 879 Antisense
ACTGTGCCAGCAATAATCCTCATCA 254 97 893 Antisense
TAATCCTCATCAATCAGACTGCCGA 65 637 906 Antisense
CTCAAAAGTGTTATCGCATCTCTCG 610 227 1102 Antisense
Sequence Source Affymetrix Proprietary Database