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[178094_at]

Description F41E7.7 /REP_DB=WormBase Gene ID /WP=CE03307 /TR=Q20279 /GB=CAA92130.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 78      6grp_total > 85      4grp_total > 03      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4171
1 2 3 4 range
A 1221.1
(-2.2)
P 		651.6
(-3)
P 		644.6
(-3)
P 		4769.9
(3)
P 		4125
B 1221.2
(-1.9)
P 		630.5
(-2.9)
P 		599.4
(-3)
P 		4034.9
(3)
P 		3436
C 1242.5
(-1.9)
P 		773
(-2.7)
P 		601
(-3)
P 		4200.9
(3)
P 		3600
avr 1228.3
(-2) 		685
(-2.9) 		615
(-3) 		4335.2
(3) 		3720

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 909
1 2 3 4 5 6 range
A 1645.9
(2.2)
P 		1174.4
(-3)
P 		1717.8
(3)
P 		1620.1
(1.9)
P 		1570.2
(1.4)
P 		1383.1
(-0.7)
P 		543
B 1103.2
(-3)
P 		1470.9
(-0.3)
P 		1536.8
(0.2)
P 		1735.7
(1.7)
P 		1918.7
(3)
P 		1850.8
(2.5)
P 		816
C 1009.3
(-3)
P 		1433.3
(-0)
P 		1132.4
(-2.1)
P 		1845
(2.9)
P 		1284.7
(-1.1)
P 		1859.5
(3)
P 		850
avr 1252.8
(-3) 		1359.5
(-1.7) 		1462.3
(-0.4) 		1733.6
(3) 		1591.2
(1.2) 		1697.8
(2.6) 		481
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 721
1 2 3 4 range
A 444.6
(0.3)
P 		141.4
(-3)
P 		168.5
(-2.7)
P 		698.2
(3)
P 		557
B 389.4
(-0.9)
P 		155.7
(-2.9)
P 		138.9
(-3)
P 		859.8
(3)
P 		721
C 411.3
(-0.6)
P 		222.2
(-2.8)
P 		209.5
(-3)
P 		708.3
(3)
P 		499
avr 415.1
(-0.5) 		173.1
(-3) 		172.3
(-3) 		755.4
(3) 		583

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 491
1 2 3 4 5 6 range
A 303.4
(-3)
P 		417.7
(1)
P 		374.1
(-0.5)
P 		410.9
(0.8)
P 		473.8
(3)
P 		336.7
(-1.8)
P 		170
B 383.9
(-2.8)
P 		489.6
(-1.3)
P 		373.2
(-3)
P 		459.7
(-1.7)
P 		779.5
(3)
P 		690.1
(1.7)
P 		406
C 374.1
(-1.5)
P 		437.4
(-0.3)
P 		288.2
(-3)
P 		371
(-1.5)
P 		415.7
(-0.7)
P 		622.5
(3)
P 		334
avr 353.8
(-2.8) 		448.2
(-0.1) 		345.2
(-3) 		413.9
(-1) 		556.3
(3) 		549.8
(2.8) 		211
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178094_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16038
Sequence Type Exemplar sequence
Representative Public ID F41E7.7 NCBI
Target Description F41E7.7 /REP_DB=WormBase Gene ID /WP=CE03307 /TR=Q20279 /GB=CAA92130.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077329 NCBI Caenorhabditis elegans F41E7.7 (F41E7.7) mRNA, complete cds. 11/11 None
GENEFINDER00000016497 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10311405:10312040:1 11/11 None
F41E7.7 ENSEMBL cdna:known chromosome:CEL140:X:10311405:10312044:1 gene:F41E7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10311404-10312044(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41E7.7
Entrez Gene 185625 Entrez gene
SwissProt Q20279 EMBL-EBI
WormBase CE03307 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92130 Hypothetical protein F41E7.7 [Caenorhabditis elegans] ref|NP_509730.1| F41E7.7 [Caenorhabditis elegans] 4.0E-18
blast CAE70559 Hypothetical protein CBG17206 [Caenorhabditis briggsae] 9.0E-18
blast CAA92130 Hypothetical protein F41E7.7 [Caenorhabditis elegans] ref|NP_509730.1| F41E7.7 [Caenorhabditis elegans] 8.0E-17
blast CAE70559 Hypothetical protein CBG17206 [Caenorhabditis briggsae] 2.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509730.1 1 4-21
F41E7.7 1 4-21
GENEFINDER00000016497 1 4-21
Sequence
Target Sequence 
>C. ELEGANS:178094_AT
ccttgttcgctcttattgcggttgcatctgctttccgcggaggacatggacgcccactat
acggaataattggagacgttcaatcagtggaatcgtcaatcccacttcgaggtttcgcca
atcacggtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTGTTCGCTCTTATTGCGGTTGC 527 269 41 Antisense
TTATTGCGGTTGCATCTGCTTTCCG 450 679 53 Antisense
ATCTGCTTTCCGCGGAGGACATGGA 208 23 66 Antisense
GCTTTCCGCGGAGGACATGGACGCC 71 305 70 Antisense
ACATGGACGCCCACTATACGGAATA 24 107 84 Antisense
GGACGCCCACTATACGGAATAATTG 445 521 88 Antisense
GGAGACGTTCAATCAGTGGAATCGT 363 517 112 Antisense
AGTGGAATCGTCAATCCCACTTCGA 273 59 126 Antisense
AATCGTCAATCCCACTTCGAGGTTT 680 165 131 Antisense
CACTTCGAGGTTTCGCCAATCACGG 187 197 143 Antisense
TCGAGGTTTCGCCAATCACGGTGGA 197 599 147 Antisense
Sequence Source Affymetrix Proprietary Database