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[178093_at]

Description F28H7.4 /REP_DB=WormBase Gene ID /WP=CE05754 /TR=Q19892 /GB=CAA96637.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 7.7
(-3)
A 		10.5
(-2.3)
A 		11.2
(-2.2)
A 		32.5
(3)
A 		25
B 21.1
(3)
A 		8.4
(-1.4)
A 		3.9
(-3)
A 		9.3
(-1.1)
A 		17
C 3.2
(-3)
A 		5.1
(-2.7)
A 		3.5
(-3)
A 		40.6
(3)
A 		37
avr 10.7
(-1.7) 		8
(-2.5) 		6.2
(-3) 		27.5
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 8.5
(-1.4)
A 		2.6
(-3)
A 		6.1
(-2)
A 		8.7
(-1.3)
A 		24.1
(3)
A 		11.5
(-0.5)
A 		22
B 10.2
(2.9)
A 		9.4
(2.1)
A 		4.5
(-3)
A 		5.3
(-2.2)
A 		10.3
(3)
A 		9.4
(2.1)
A 		6
C 2.2
(-3)
A 		5.6
(-2.2)
A 		2.8
(-2.9)
A 		27.3
(3)
A 		2.2
(-3)
A 		23.4
(2.1)
A 		25
avr 7
(-1.5) 		5.9
(-2.2) 		4.5
(-3) 		13.8
(2.4) 		12.2
(1.5) 		14.8
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.8
(-1.8)
A 		2.3
(-3)
A 		2.9
(-1.6)
A 		4.8
(3)
A 		3
B 6.7
(3)
A 		2.1
(-1.8)
A 		0.9
(-3)
A 		2
(-1.9)
A 		6
C 1.1
(-3)
A 		1.5
(-2.6)
A 		1.2
(-2.9)
A 		6.8
(3)
A 		6
avr 3.5
(0.9) 		2
(-2.4) 		1.7
(-3) 		4.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.6
(-2.3)
A 		0.9
(-3)
A 		1.3
(-2.6)
A 		2.2
(-1.8)
A 		7.3
(3)
A 		2.8
(-1.2)
A 		6
B 3.6
(1.8)
A 		3.1
(0.9)
A 		1.1
(-3)
A 		1.4
(-2.4)
A 		4.2
(3)
A 		3.5
(1.6)
A 		3
C 0.8
(-2.9)
A 		1.7
(-2.2)
A 		0.7
(-3)
A 		5.5
(1.1)
A 		0.7
(-3)
A 		7.8
(3)
A 		7
avr 2
(-1.4) 		1.9
(-1.5) 		1
(-3) 		3
(0.2) 		4.1
(2) 		4.7
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178093_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12766
Sequence Type Exemplar sequence
Representative Public ID F28H7.4 NCBI
Target Description F28H7.4 /REP_DB=WormBase Gene ID /WP=CE05754 /TR=Q19892 /GB=CAA96637.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073340(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073340 NCBI Caenorhabditis elegans F28H7.4 (F28H7.4) mRNA, complete cds. 10/11 None
SNAP00000038690 ENSEMBL cdna:SNAP chromosome:CEL140:V:10749133:10749922:-1 10/11 None
GENEFINDER00000038703 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10749133:10749922:-1 10/11 None
F28H7.4 ENSEMBL cdna:known chromosome:CEL140:V:10749133:10749922:-1 gene:F28H7.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10749132-10749922(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28H7.4
Entrez Gene 185097 Entrez gene
WormBase CE36142 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96637 Hypothetical protein F28H7.4 [Caenorhabditis elegans] ref|NP_505741.2| F28H7.4 [Caenorhabditis elegans] 1.0E-120
blast Q19892 Putative selT-like protein F28H7.4 precursor 1.0E-116
blast CAE70619 Hypothetical protein CBG17303 [Caenorhabditis briggsae] 9.0E-52
Sequence
Target Sequence 
>C. ELEGANS:178093_AT
gaaccgcctgcagaagattcaagacttgaagattatctgtcttccgagctcgaaaccact
gcaattcctactgttgttaatgaaaattcccattcgcaagacgtagttgattctggtttc
tccaaagatttgccaaaactaacgattctctattggttcgtgttttggatttttttgaat
ataaacttgacaattgttttcagtgtttcgtgcggttacaaacaagcattcaatcaattt
tatgaatttgctaaagaaaagtatccaggcttggtaatcgaaggcggaaatttttctcca
gatttttggaaaggatgccttgctcagattgttggtgtggcaaaaataggactaattgct
attgttataactggatcaaatccttttgaatatattggctttggatatccacaaatccta
caaacagctcattacaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCGCCTGCAGAAGATTCAAGAC 374 347 88 Antisense
TTATCTGTCTTCCGAGCTCGAAACC 335 679 120 Antisense
AAACCACTGCAATTCCTACTGTTGT 425 125 140 Antisense
AAATTCCCATTCGCAAGACGTAGTT 686 113 171 Antisense
GACGTAGTTGATTCTGGTTTCTCCA 442 375 187 Antisense
GATTTGCCAAAACTAACGATTCTCT 678 427 214 Antisense
GATTCTCTATTGGTTCGTGTTTTGG 199 431 231 Antisense
TGTTTTCAGTGTTTCGTGCGGTTAC 555 559 282 Antisense
GAAGGCGGAAATTTTTCTCCAGATT 358 333 367 Antisense
GATGCCTTGCTCAGATTGTTGGTGT 285 415 401 Antisense
ATCCTACAAACAGCTCATTACAACA 643 37 502 Antisense
Sequence Source Affymetrix Proprietary Database