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[178092_at]

Description F43C1.3 /REP_DB=WormBase Gene ID /WP=CE16032 /TR=O45940 /GB=CAA15981.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 13      4grp_high_8_8 > 04      6grp_highest_nonorm > 80      6grp_total > 12      4grp_total > 06      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 113.6
(-2.2)
P 		113.6
(-2.2)
P 		104.1
(-3)
P 		180
(3)
P 		76
B 189.1
(0.9)
P 		130.6
(-3)
P 		168.1
(-0.5)
P 		221.5
(3)
P 		91
C 166.6
(0.6)
P 		99.8
(-3)
A 		137.2
(-1)
P 		211.1
(3)
P 		111
avr 156.4
(-0.2) 		114.7
(-3) 		136.5
(-1.5) 		204.2
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 236
(2.7)
P 		242.8
(3)
P 		232.5
(2.6)
P 		142
(-1.4)
P 		104.7
(-3)
P 		122.5
(-2.2)
P 		138
B 184.2
(0.5)
P 		257.4
(3)
P 		255.9
(2.9)
P 		81
(-3)
P 		155.6
(-0.5)
P 		124.8
(-1.5)
P 		176
C 194.6
(-0.2)
P 		274.3
(3)
P 		130.5
(-2.8)
P 		224.4
(1)
P 		125.6
(-3)
P 		155.6
(-1.8)
P 		149
avr 204.9
(0.5) 		258.2
(3) 		206.3
(0.6) 		149.1
(-2.1) 		128.6
(-3) 		134.3
(-2.7) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 41.4
(3)
P 		24.7
(-3)
P 		27.2
(-2.1)
P 		26.4
(-2.4)
P 		17
B 60.3
(3)
P 		32.3
(-3)
P 		38.9
(-1.6)
P 		47.2
(0.2)
P 		28
C 55.1
(3)
P 		28.7
(-3)
A 		47.8
(1.3)
P 		35.6
(-1.4)
P 		26
avr 52.3
(3) 		28.6
(-3) 		38
(-0.6) 		36.4
(-1) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 43.5
(-1.5)
P 		86.4
(3)
P 		50.6
(-0.8)
P 		36
(-2.3)
P 		31.6
(-2.8)
P 		29.8
(-3)
P 		57
B 64.1
(1)
P 		85.7
(3)
P 		62.1
(0.8)
P 		21.5
(-3)
P 		63.2
(0.9)
P 		46.6
(-0.7)
P 		64
C 72.1
(1.6)
P 		83.7
(3)
P 		33.2
(-3)
P 		45.1
(-1.6)
P 		40.6
(-2.1)
P 		52.1
(-0.8)
P 		51
avr 59.9
(0) 		85.3
(3) 		48.6
(-1.3) 		34.2
(-3) 		45.1
(-1.7) 		42.8
(-2) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6028
Sequence Type Exemplar sequence
Representative Public ID F43C1.3 NCBI
Target Description F43C1.3 /REP_DB=WormBase Gene ID /WP=CE16032 /TR=O45940 /GB=CAA15981.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065449
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000038126 ENSEMBL cdna:SNAP chromosome:CEL140:III:4243744:4244355:-1 None
GENEFINDER00000038130 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4243749:4244355:-1 None
F43C1.3 ENSEMBL cdna:known chromosome:CEL140:III:4243654:4244355:-1 gene:F43C1.3 None
NM_065449 NCBI Caenorhabditis elegans F43C1.3 (F43C1.3) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027414 4/11 Cross Hyb Matching Probes None
NM_001027415 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025138 1/11 Cross Hyb Matching Probes None
SNAP00000025135 2/11 Cross Hyb Matching Probes None
SNAP00000025136 4/11 Cross Hyb Matching Probes None
GENEFINDER00000025142 4/11 Cross Hyb Matching Probes None
F43C1.7 1/11 Cross Hyb Matching Probes None
F43C1.6.1 4/11 Cross Hyb Matching Probes None
F43C1.6.2 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4241395-4244355(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C1.3
Entrez Gene 185691 Entrez gene
SwissProt Q7K7S3 EMBL-EBI
WormBase CE37012 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15981 Hypothetical protein F43C1.3 [Caenorhabditis elegans] ref|NP_497850.2| F43C1.3 [Caenorhabditis elegans] 1.0E-107
blast T22121 hypothetical protein F43C1.3 - Caenorhabditis elegans 1.0E-106
blast CAA15981 Hypothetical protein F43C1.3 [Caenorhabditis elegans] ref|NP_497850.2| F43C1.3 [Caenorhabditis elegans] 1.0E-106
blast CAE73727 Hypothetical protein CBG21249 [Caenorhabditis briggsae] 3.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR007529 EMBL-EBI HIT Zn-finger 7.5E-12
Sequence
Target Sequence 
>C. ELEGANS:178092_AT
aagacaacgaatcccgaattgcactatgttcatctcaatcatcatcagaccaaatttctc
aattggaaaagcgacgaggcgacggttcttcgaatcaaaagtgtgacggcaaagcagatt
gagcacacagaaactcacaattttacgatttttctaggattttccaaactaaaaatggtt
ttcggattcatttcgtctacagtaaccccgccggctttaatatttatgggggaacaccag
gtggaaaatgagaagttattcaagcttgaagaatgttgccagttggtgaagaaaaactca
attcagggtgtgaaaatggaaaaagttgaagttaattatactttgaaagagaatttaaag
aaagttaaaggaatgcagacaggagagaaaactagccgctttacaagtctacttttcaga
ttggtttctacgacaagaacatcatcaaatctcgcagtgtcctcaagaaaaacacgaaaa
aagtacttcaacaacttgaaggaactcaatggaaaacctgaaatacctaatttttatccc
gaattctccccgaagaaacagacttctctgcatatttggccttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACAACGAATCCCGAATTGCACT 512 151 1048 Antisense
CCCGAATTGCACTATGTTCATCTCA 236 261 1060 Antisense
GTTCATCTCAATCATCATCAGACCA 320 445 1075 Antisense
GACGAGGCGACGGTTCTTCGAATCA 465 377 1120 Antisense
GACGGCAAAGCAGATTGAGCACACA 252 377 1152 Antisense
GTTTTCGGATTCATTTCGTCTACAG 82 449 1225 Antisense
AACTAGCCGCTTTACAAGTCTACTT 663 139 1437 Antisense
GTCTACTTTTCAGATTGGTTTCTAC 478 467 1454 Antisense
CATCATCAAATCTCGCAGTGTCCTC 278 213 1487 Antisense
TCCCGAATTCTCCCCGAAGAAACAG 231 595 1584 Antisense
ACTTCTCTGCATATTTGGCCTTGTC 416 103 1609 Antisense
Sequence Source Affymetrix Proprietary Database