[Home] | [Total List]

[178091_at]

Description F47H4.8 /REP_DB=WormBase Gene ID /WP=CE20825 /TR=Q9XU29 /GB=CAB07207.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 0      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 57
(-0.3)
A 		36.3
(-3)
A 		52.9
(-0.9)
A 		83
(3)
P 		47
B 57.9
(2.5)
A 		10.9
(-3)
A 		18.2
(-2.1)
A 		62.2
(3)
P 		51
C 37.1
(-3)
A 		43.3
(-2.5)
A 		73.6
(0.1)
A 		107.4
(3)
P 		70
avr 50.7
(-0.7) 		30.2
(-3) 		48.2
(-1) 		84.2
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 57.7
(-3)
A 		81.6
(3)
A 		68.8
(-0.2)
A 		73.1
(0.9)
A 		78.6
(2.2)
P 		66.6
(-0.8)
A 		24
B 94.7
(0.5)
M 		94
(0.4)
A 		113
(2.8)
P 		66.6
(-3)
P 		114.8
(3)
P 		101.1
(1.3)
P 		48
C 57
(-2.1)
A 		84.6
(0.7)
A 		85.4
(0.8)
P 		48.5
(-3)
A 		106.9
(3)
P 		88.2
(1.1)
P 		58
avr 69.8
(-1.9) 		86.7
(0.9) 		89.1
(1.2) 		62.7
(-3) 		100.1
(3) 		85.3
(0.6) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 20.8
(3)
A 		7.9
(-3)
A 		13.8
(-0.3)
A 		12.1
(-1)
P 		13
B 18.5
(3)
A 		2.7
(-3)
A 		4.2
(-2.4)
A 		13.3
(1)
P 		16
C 12.3
(-3)
A 		12.5
(-2.9)
A 		25.6
(3)
A 		18.1
(-0.4)
P 		13
avr 17.2
(3) 		7.7
(-3) 		14.5
(1.3) 		14.5
(1.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 10.6
(-3)
A 		29
(3)
A 		15
(-1.6)
A 		18.5
(-0.4)
A 		23.7
(1.3)
P 		16.2
(-1.2)
A 		18
B 33
(0.2)
M 		31.3
(-0.2)
A 		27.4
(-1)
P 		17.6
(-3)
P 		46.7
(3)
P 		37.7
(1.1)
P 		29
C 21.1
(-0.3)
A 		25.8
(0.9)
A 		21.7
(-0.1)
P 		9.7
(-3)
A 		34.6
(3)
P 		29.5
(1.8)
P 		25
avr 21.6
(-1.1) 		28.7
(1.1) 		21.4
(-1.1) 		15.3
(-3) 		35
(3) 		27.8
(0.8) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178091_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14666
Sequence Type Exemplar sequence
Representative Public ID F47H4.8 NCBI
Target Description F47H4.8 /REP_DB=WormBase Gene ID /WP=CE20825 /TR=Q9XU29 /GB=CAB07207.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074990(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074990 NCBI Caenorhabditis elegans F47H4.8 (F47H4.8) mRNA, complete cds. 11/11 None
GENEFINDER00000022039 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17345513:17347479:-1 11/11 None
F47H4.8 ENSEMBL cdna:known chromosome:CEL140:V:17345513:17347479:-1 gene:F47H4.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17345512-17347479(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47H4.8
Entrez Gene 185954 Entrez gene
SwissProt Q9XU29 EMBL-EBI
WormBase CE20825 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07207 Hypothetical protein F47H4.8 [Caenorhabditis elegans] ref|NP_507391.1| F47H4.8 [Caenorhabditis elegans] 1.0E-155
blast CAB63436 Hypothetical protein C38D9.7 [Caenorhabditis elegans] ref|NP_507447.1| C38D9.7 [Caenorhabditis elegans] 3.0E-59
blast CAB03947 Hypothetical protein C38D9.1 [Caenorhabditis elegans] ref|NP_507449.1| C38D9.1 [Caenorhabditis elegans] 2.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.4E-17
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-7
Sequence
Target Sequence 
>C. ELEGANS:178091_AT
ggtcaatccattactagatatgtccaacaacctttccgaaaaagagtggtgcaggagttt
tgttcaatttttccatggtttaccgccccgaccaaacaaaaaacctgctttctcactaca
aagtatgcccagaaaagtttggcaagaactctgtagcaaattggaaccttgcgataggct
tgtcgctaaaaaagttacacgtcgctttcgtcaaactattgatgagcaagacaatctttt
taatacattgggaatatgtttcgaagacgataagactagaatattcttcaatgagaaaac
attccactatacttctgtaggaaacgaatgcaggataacattggaccttttcaccaaaga
agatgctattaaaatcaaagatattttgacgagatccgacaatttcaaatacgccaactt
cgaatcaggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCAATCCATTACTAGATATGTCC 591 503 228 Antisense
GATATGTCCAACAACCTTTCCGAAA 542 425 244 Antisense
GAGTGGTGCAGGAGTTTTGTTCAAT 425 401 271 Antisense
ACAAAAAACCTGCTTTCTCACTACA 45 111 323 Antisense
TTTCTCACTACAAAGTATGCCCAGA 210 671 336 Antisense
GGAACCTTGCGATAGGCTTGTCGCT 487 529 390 Antisense
AGTTACACGTCGCTTTCGTCAAACT 621 61 420 Antisense
AAACATTCCACTATACTTCTGTAGG 350 127 524 Antisense
AGGATAACATTGGACCTTTTCACCA 138 57 559 Antisense
GACGAGATCCGACAATTTCAAATAC 356 379 615 Antisense
AATACGCCAACTTCGAATCAGGCAA 263 173 635 Antisense
Sequence Source Affymetrix Proprietary Database