[Home] | [Total List]

[178090_at]

Description F13A7.6 /REP_DB=WormBase Gene ID /WP=CE15812 /TR=O45355 /GB=CAB07577.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 10      6grp_cgc > 40      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 6.2
(-3)
A 		29.7
(2)
A 		31.9
(2.4)
A 		34.5
(3)
A 		28
B 58
(3)
A 		29.2
(-1.2)
A 		16.4
(-3)
A 		22.6
(-2.1)
A 		42
C 24.7
(-3)
A 		42
(-2)
A 		31.7
(-2.6)
A 		127.8
(3)
P 		103
avr 29.6
(-2.5) 		33.6
(-1.8) 		26.7
(-3) 		61.6
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 77.3
(3)
P 		14.7
(-3)
A 		15.1
(-3)
A 		26.9
(-1.8)
A 		34.4
(-1.1)
A 		29.8
(-1.6)
A 		63
B 36.5
(-1.9)
A 		53
(1.3)
A 		30.8
(-3)
A 		62
(3)
A 		36.1
(-2)
A 		41.4
(-1)
P 		31
C 7
(-3)
A 		50.8
(1.6)
P 		63.9
(3)
A 		28.8
(-0.7)
A 		23.9
(-1.2)
A 		23.9
(-1.2)
A 		57
avr 40.3
(3) 		39.5
(2.5) 		36.6
(0.5) 		39.2
(2.3) 		31.5
(-3) 		31.7
(-2.9) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.3
(-3)
A 		6.5
(1.2)
A 		8.3
(3)
A 		5.1
(-0.2)
A 		6
B 18.5
(3)
A 		7.2
(-1.6)
A 		3.8
(-3)
A 		4.8
(-2.6)
A 		15
C 8.2
(-3)
A 		12.1
(-1.2)
A 		11
(-1.7)
A 		21.5
(3)
P 		13
avr 9.7
(1.3) 		8.6
(-1.1) 		7.7
(-3) 		10.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 14.3
(3)
P 		5.2
(-2)
A 		3.3
(-3)
A 		6.8
(-1.1)
A 		10.4
(0.9)
A 		7.3
(-0.8)
A 		11
B 12.7
(0.1)
A 		17.7
(3)
A 		7.5
(-3)
A 		16.4
(2.2)
A 		14.7
(1.2)
A 		15.4
(1.6)
P 		10
C 2.6
(-3)
A 		15.5
(2.6)
P 		16.3
(3)
A 		5.8
(-1.6)
A 		7.7
(-0.8)
A 		8
(-0.6)
A 		14
avr 9.9
(-1.6) 		12.8
(3) 		9
(-3) 		9.7
(-1.9) 		10.9
(0) 		10.2
(-1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14124
Sequence Type Exemplar sequence
Representative Public ID F13A7.6 NCBI
Target Description F13A7.6 /REP_DB=WormBase Gene ID /WP=CE15812 /TR=O45355 /GB=CAB07577.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000025232 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16384750:16387877:-1 9/11 None
F13A7.6 ENSEMBL cdna:pseudogene chromosome:CEL140:V:16387073:16388719:-1 gene:F13A7.6 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16387038-16388719(-) 100.0 100.0
Public Domain and Genome References
Ensembl F13A7.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07580 Hypothetical protein F13A7.7 [Caenorhabditis elegans] ref|NP_507138.1| F13A7.7 [Caenorhabditis elegans] 1.0E-147
blast T20811 hypothetical protein F13A7.6 - Caenorhabditis elegans 3.0E-74
blast CAE69243 Hypothetical protein CBG15287 [Caenorhabditis briggsae] 5.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.0E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025232 3 60-82,106-128,140-162
Sequence
Target Sequence 
>C. ELEGANS:178090_AT
taatagcggttgtttccttcgttgcactatcaattgatatatttttgataatgaatatcg
tgaaagcaaaaatgtcaaaaaccaattatcaacgtcataaacatgccgttcgaagcctcc
aagtatcaatggcatcatcattagttttcatatcacctccagcatttgttatatcgatgt
tagttcttagaactgaaaacacccaatttttaactgaaattgcgatggctgtcgtgtgta
ctcatggatctgttaatattctaagcatgatcttctttttcccgccgtatcgagtatttt
tggaaggttttttgaggaggcatcacttaggcatcatgagcactttgcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATAGCGGTTGTTTCCTTCGTTGC 187 633 722 Antisense
TGTTTCCTTCGTTGCACTATCAATT 458 561 732 Antisense
CCGTTCGAAGCCTCCAAGTATCAAT 541 263 827 Antisense
ATTAGTTTTCATATCACCTCCAGCA 217 13 861 Antisense
TCACCTCCAGCATTTGTTATATCGA 125 627 874 Antisense
ATTGCGATGGCTGTCGTGTGTACTC 265 7 940 Antisense
GTCGTGTGTACTCATGGATCTGTTA 345 473 952 Antisense
TCTAAGCATGATCTTCTTTTTCCCG 73 613 981 Antisense
TTTCCCGCCGTATCGAGTATTTTTG 666 623 999 Antisense
GAGGAGGCATCACTTAGGCATCATG 159 403 1035 Antisense
TAGGCATCATGAGCACTTTGCGAAA 368 653 1049 Antisense
Sequence Source Affymetrix Proprietary Database