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[178089_at]

Description K03B8.6 /REP_DB=WormBase Gene ID /WP=CE06080 /TR=Q21182 /GB=CAA98505.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_high_8_8 > 59      6grp_highest_nonorm > 60      6grp_total > 12      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 569
1 2 3 4 range
A 415.5
(1.9)
P 		331.7
(0.7)
P 		489.1
(3)
P 		87.2
(-3)
P 		402
B 474.4
(3)
P 		449.7
(2.7)
P 		453.6
(2.7)
P 		15.4
(-3)
A 		459
C 422.8
(1.1)
P 		510
(2.1)
P 		584.3
(3)
P 		79.8
(-3)
A 		505
avr 437.6
(2) 		430.5
(1.9) 		509
(3) 		60.8
(-3) 		448

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 436
1 2 3 4 5 6 range
A 350.4
(-0.1)
P 		572
(3)
P 		403.2
(0.6)
P 		278
(-1.2)
P 		194.4
(-2.3)
P 		148.5
(-3)
P 		424
B 482.7
(2.2)
P 		534.4
(3)
P 		338.5
(-0.2)
P 		299.1
(-0.9)
P 		216
(-2.2)
P 		167.7
(-3)
P 		367
C 563.7
(3)
P 		501.8
(2.1)
P 		402.6
(0.7)
P 		283.3
(-0.9)
P 		197.2
(-2.1)
P 		136
(-3)
P 		428
avr 465.6
(1.9) 		536.1
(3) 		381.4
(0.6) 		286.8
(-0.9) 		202.5
(-2.2) 		150.7
(-3) 		385
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 151.3
(3)
P 		72
(-0.4)
P 		127.9
(2)
P 		12.8
(-3)
P 		139
B 151.3
(3)
P 		111.1
(1.4)
P 		105.1
(1.1)
P 		3.3
(-3)
A 		148
C 140
(1)
P 		146.6
(1.2)
P 		203.7
(3)
P 		13.5
(-3)
A 		190
avr 147.5
(3) 		109.9
(1.4) 		145.6
(2.9) 		9.9
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 64.6
(-2)
P 		203.4
(3)
P 		87.8
(-1.1)
P 		70.5
(-1.8)
P 		58.7
(-2.2)
P 		36.2
(-3)
P 		167
B 168
(2.5)
P 		177.9
(3)
P 		82.2
(-2)
P 		79.2
(-2.1)
P 		87.7
(-1.7)
P 		62.5
(-3)
P 		115
C 209
(3)
P 		153.1
(0.9)
P 		102.5
(-0.9)
P 		57
(-2.6)
P 		63.8
(-2.3)
P 		45.5
(-3)
P 		164
avr 147.2
(1.6) 		178.1
(3) 		90.8
(-1) 		68.9
(-2) 		70.1
(-2) 		48.1
(-3) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178089_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13852
Sequence Type Exemplar sequence
Representative Public ID K03B8.6 NCBI
Target Description K03B8.6 /REP_DB=WormBase Gene ID /WP=CE06080 /TR=Q21182 /GB=CAA98505.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073493(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073493 NCBI Caenorhabditis elegans K03B8.6 (K03B8.6) mRNA, complete cds. 11/11 None
SNAP00000002785 ENSEMBL cdna:SNAP chromosome:CEL140:V:11410173:11411713:1 11/11 None
GENEFINDER00000002809 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11410173:11411713:1 11/11 None
K03B8.6.1 ENSEMBL cdna:known chromosome:CEL140:V:11410111:11412118:1 gene:K03B8.6 11/11 None
K03B8.6.2 ENSEMBL cdna:known chromosome:CEL140:V:11410172:11411713:1 gene:K03B8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11410172-11411350(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03B8.6
Entrez Gene 186927 Entrez gene
SwissProt Q21182 EMBL-EBI
WormBase CE31967 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98505 Hypothetical protein K03B8.6 [Caenorhabditis elegans] ref|NP_505894.2| K03B8.6 [Caenorhabditis elegans] 1.0E-166
blast CAE75239 Hypothetical protein CBG23191 [Caenorhabditis briggsae] 1.0E-146
Sequence
Target Sequence 
>C. ELEGANS:178089_AT
acttgatccttgctccatggagaatcactcatgttgttccgaaaaagaaagaagctgaag
ttccaaagaaagcaatggctctgtcatttgatgtctgtcctgaaaaattcgatgcaatta
caaagggaatcaatggaagaacctatgtttttgctcgcgaaagggtttatcaaatttggt
ttgaagacggacttccacaaaaagcgtcttacttgatcagtgaattctttgctggaggac
cgagaactgtgaccgccgcattgacaaattctcgatctggagtcacaattctctttgatg
gacgaactgcatacagattccgttggaacagaaaacatcgtagattccagctggcgaaaa
ataccccacaagatcttccccgaaacatcacaatccatccattgtcagcatttgaatggg
ccgatggaaatcaagttgttctcagtggtgaacacttcatcatctacgacgcatactgga
acttagccacattcacaggccacacacgcaagtatttcccaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGATCCTTGCTCCATGGAGAAT 315 101 323 Antisense
GGAGAATCACTCATGTTGTTCCGAA 435 519 341 Antisense
GGCTCTGTCATTTGATGTCTGTCCT 309 539 399 Antisense
GAAGAACCTATGTTTTTGCTCGCGA 68 341 458 Antisense
TGGAGGACCGAGAACTGTGACCGCC 491 547 555 Antisense
TGACCGCCGCATTGACAAATTCTCG 604 569 572 Antisense
GGAGTCACAATTCTCTTTGATGGAC 525 517 601 Antisense
AACATCGTAGATTCCAGCTGGCGAA 201 137 656 Antisense
GTGAACACTTCATCATCTACGACGC 379 481 770 Antisense
TTAGCCACATTCACAGGCCACACAC 3 683 805 Antisense
CACACACGCAAGTATTTCCCAAATC 480 193 823 Antisense
Sequence Source Affymetrix Proprietary Database