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[178088_at]

Description F19B2.2 /REP_DB=WormBase Gene ID /WP=CE20694 /TR=Q9XXS9 /GB=CAA16270.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 40      6grp_cgc > 95      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 5.2
(-2.5)
A 		4.8
(-3)
A 		9.5
(3)
A 		7.5
(0.4)
A 		5
B 6.6
(-2.6)
A 		11.9
(-1.3)
A 		30.2
(3)
A 		4.8
(-3)
A 		25
C 6.1
(-2.5)
A 		8.1
(-1.2)
A 		5.3
(-3)
A 		14.5
(3)
A 		9
avr 6
(-3) 		8.3
(-1.5) 		15
(3) 		8.9
(-1.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 33.1
(3)
A 		4.7
(-3)
A 		10.4
(-1.8)
A 		4.5
(-3)
A 		28.4
(2)
A 		19.1
(0.1)
A 		29
B 12.3
(3)
A 		3.8
(-3)
A 		7.2
(-0.6)
A 		12
(2.8)
A 		6.4
(-1.2)
A 		6.2
(-1.3)
A 		9
C 8.3
(-2.4)
A 		16.7
(-1.6)
A 		6.8
(-2.5)
A 		67.1
(3)
A 		3.1
(-2.9)
A 		1.5
(-3)
A 		66
avr 17.9
(-0) 		8.4
(-2.9) 		8.1
(-3) 		27.9
(3) 		12.6
(-1.6) 		8.9
(-2.8) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.9
(0.4)
A 		1.1
(-3)
A 		2.5
(3)
A 		1.1
(-3)
A 		1
B 2.1
(-1.9)
A 		2.9
(-1.1)
A 		7
(3)
A 		1
(-3)
A 		6
C 2
(-1)
A 		2.3
(2)
A 		1.8
(-3)
A 		2.4
(3)
A 		1
avr 2
(-1.7) 		2.1
(-1.4) 		3.8
(3) 		1.5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 6.1
(1)
A 		1.7
(-2.6)
A 		2.3
(-2.1)
A 		1.2
(-3)
A 		8.6
(3)
A 		4.7
(-0.2)
A 		7
B 4.3
(3)
A 		1.3
(-3)
A 		1.7
(-2.2)
A 		3.2
(0.8)
A 		2.6
(-0.4)
A 		2.3
(-1)
A 		3
C 3.1
(-1.8)
A 		5.1
(-0.9)
A 		1.7
(-2.4)
A 		13.5
(3)
A 		1
(-2.8)
A 		0.5
(-3)
A 		13
avr 4.5
(0.8) 		2.7
(-1.8) 		1.9
(-3) 		6
(3) 		4.1
(0.2) 		2.5
(-2.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178088_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12916
Sequence Type Exemplar sequence
Representative Public ID F19B2.2 NCBI
Target Description F19B2.2 /REP_DB=WormBase Gene ID /WP=CE20694 /TR=Q9XXS9 /GB=CAA16270.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F19B2.2 ENSEMBL cdna:pseudogene chromosome:CEL140:V:20170818:20171996:-1 gene:F19B2.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20170817-20171803(-) 100.0 100.0
Public Domain and Genome References
Ensembl F19B2.2
Sequence
Target Sequence 
>C. ELEGANS:178088_AT
ttctatccatatggtggctcctttcaatcatcattcaagtattctatatactaattattc
tactagccattgagaaatttgccatttacttttttccatcaactgagaaatttgtgatat
cagcgcaaaagtatcaaatcaaatatgtgaagggtttttatctgataacgtatatatgct
ttaacattaccttcatgctctccgccctgttatatgttccgataatgataagtctcggca
aattttcctatttaatttcggctcagcgcaacaacccacaaaaatacattttctggcaga
ccttcaatattctcatattcaaattggtcgctcttgaaccctttgaggatttggtgctca
gtcagatgtttggcgatattattattatcccgcaagtcattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTATCCATATGGTGGCTCCTTTC 117 691 143 Antisense
GGCTCCTTTCAATCATCATTCAAGT 504 539 158 Antisense
ATTTGCCATTTACTTTTTTCCATCA 666 17 219 Antisense
GCTTTAACATTACCTTCATGCTCTC 243 305 320 Antisense
CCGCCCTGTTATATGTTCCGATAAT 446 261 344 Antisense
ATAAGTCTCGGCAAATTTTCCTATT 617 25 370 Antisense
TAATTTCGGCTCAGCGCAACAACCC 323 629 395 Antisense
TTCTGGCAGACCTTCAATATTCTCA 632 693 433 Antisense
AAATTGGTCGCTCTTGAACCCTTTG 436 115 463 Antisense
GGTGCTCAGTCAGATGTTTGGCGAT 587 499 495 Antisense
TTATTATTATCCCGCAAGTCATTCA 280 679 521 Antisense
Sequence Source Affymetrix Proprietary Database